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Report for CCDS14337.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14337.1 Public Homo sapiens X MAGED1 24 110 108 CCDS HistoryNCBI Gene:9500Re-query CCDS DB by CCDS ID:14337.1Re-query CCDS DB by GeneID:9500See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14337.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326587.12 ENSP00000325333.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000326587.12Link to Ensembl Protein Viewer:ENSP00000325333.8Re-query CCDS DB by Nucleotide ID:ENST00000326587Re-query CCDS DB by Protein ID:ENSP00000325333
Original member Current member EBI ENST00000375722.5 ENSP00000364874.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375722.5Link to Ensembl Protein Viewer:ENSP00000364874.1Re-query CCDS DB by Nucleotide ID:ENST00000375722Re-query CCDS DB by Protein ID:ENSP00000364874
Original member Current member EBI ENST00000375772.7 ENSP00000364927.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375772.7Link to Ensembl Protein Viewer:ENSP00000364927.3Re-query CCDS DB by Nucleotide ID:ENST00000375772Re-query CCDS DB by Protein ID:ENSP00000364927
Original member Current member NCBI NM_001005332.2 NP_001005332.1 Accepted alive Link to Nucleotide Sequence:NM_001005332.2Link to Protein Sequence:NP_001005332.1Re-query CCDS DB by Nucleotide ID:NM_001005332Re-query CCDS DB by Protein ID:NP_001005332Link to BLAST:NP_001005332.1
Original member Current member NCBI NM_006986.4 NP_008917.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006986.4Link to Protein Sequence:NP_008917.3Re-query CCDS DB by Nucleotide ID:NM_006986Re-query CCDS DB by Protein ID:NP_008917Link to BLAST:NP_008917.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005332.1 778 Q9Y5V3-1 778 100% 0 0
NP_008917.3 778 Q9Y5V3-1 778 100% 0 0

Chromosomal Locations for CCDS 14337.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 51894305 51894349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51895053 51895760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51896409 51897077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51897208 51897271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51897547 51897626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51897795 51897886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51898114 51898193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51898285 51898327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51898581 51898643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51900182 51900296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51901553 51901930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2337 nt):
ATGGCTCAGAAAATGGACTGTGGTGCGGGCCTCCTCGGCTTCCAGGCTGAGGCCTCCGTAGAAGACAGCG
CCTTGCTTATGCAGACCTTGATGGAGGCCATCCAGATCTCAGAGGCTCCACCTACTAACCAGGCCACCGC
AGCTGCTAGTCCCCAGAGTTCACAGCCCCCAACTGCCAATGAGATGGCTGACATTCAGGTTTCAGCAGCT
GCCGCTAGGCCTAAGTCAGCCTTTAAAGTCCAGAATGCCACCACAAAAGGCCCAAATGGTGTCTATGATT
TCTCTCAGGCTCATAATGCCAAGGATGTGCCCAACACGCAGCCCAAGGCAGCCTTTAAGTCCCAAAATGC
TACCCCAAAGGGTCCAAATGCTGCCTATGATTTTTCCCAGGCAGCAACCACTGGTGAGTTAGCTGCTAAC
AAGTCTGAGATGGCCTTCAAGGCCCAGAATGCCACTACTAAAGTGGGCCCAAATGCCACCTACAATTTCT
CTCAGTCTCTCAATGCCAATGACCTGGCCAACAGCAGGCCTAAGACCCCTTTCAAGGCTTGGAATGATAC
CACTAAGGCCCCAACAGCTGATACCCAGACCCAGAATGTAAATCAGGCCAAAATGGCCACTTCCCAGGCT
GACATAGAGACCGACCCAGGTATCTCTGAACCTGACGGTGCAACTGCACAGACATCAGCAGATGGTTCCC
AGGCTCAGAATCTGGAGTCCCGGACAATAATTCGGGGCAAGAGGACCCGCAAGATTAATAACTTGAATGT
TGAAGAGAACAGCAGTGGGGATCAGAGGCGGGCCCCACTGGCTGCAGGGACCTGGAGGTCTGCACCAGTT
CCAGTGACCACTCAGAACCCACCTGGCGCACCCCCCAATGTGCTCTGGCAGACGCCATTGGCTTGGCAGA
ACCCCTCAGGCTGGCAAAACCAGACAGCCAGGCAGACCCCACCAGCACGTCAGAGCCCTCCAGCTAGGCA
GACCCCACCAGCCTGGCAGAACCCAGTCGCTTGGCAGAACCCAGTGATTTGGCCAAACCCAGTAATCTGG
CAGAACCCAGTGATCTGGCCAAACCCCATTGTCTGGCCCGGCCCTGTTGTCTGGCCGAATCCACTGGCCT
GGCAGAATCCACCTGGATGGCAGACTCCACCTGGATGGCAGACCCCACCGGGCTGGCAGGGTCCTCCAGA
CTGGCAAGGTCCTCCTGACTGGCCGCTACCACCCGACTGGCCACTGCCACCTGATTGGCCACTTCCCACT
GACTGGCCACTACCACCTGACTGGATCCCCGCTGATTGGCCAATTCCACCTGACTGGCAGAACCTGCGCC
CCTCGCCTAACCTGCGCCCTTCTCCCAACTCGCGTGCCTCACAGAACCCAGGTGCTGCACAGCCCCGAGA
TGTGGCCCTTCTTCAGGAAAGAGCAAATAAGTTGGTCAAGTACTTGATGCTTAAGGACTACACAAAGGTG
CCCATCAAGCGCTCAGAAATGCTGAGAGATATCATCCGTGAATACACTGATGTTTATCCAGAAATCATTG
AACGTGCATGCTTTGTCCTAGAGAAGAAATTTGGGATTCAACTGAAAGAAATTGACAAAGAAGAACACCT
GTATATTCTCATCAGTACCCCCGAGTCCCTGGCTGGCATACTGGGAACGACCAAAGACACACCCAAGCTC
GGTCTCCTCTTGGTGATTCTGGGTGTCATCTTCATGAATGGCAACCGTGCCAGTGAGGCTGTCCTCTGGG
AGGCACTACGCAAGATGGGACTGCGTCCTGGGGTGAGACATCCCCTCCTTGGAGATCTAAGGAAACTTCT
CACCTATGAGTTTGTAAAGCAGAAATACCTGGACTACAGACGAGTGCCCAACAGCAACCCCCCGGAGTAT
GAGTTCCTCTGGGGCCTCCGTTCCTACCATGAGACTAGCAAGATGAAAGTGCTGAGATTCATTGCAGAGG
TTCAGAAAAGAGACCCTCGTGACTGGACTGCACAGTTCATGGAGGCTGCAGATGAGGCCTTGGATGCTCT
GGATGCTGCTGCAGCTGAGGCCGAAGCCCGGGCTGAAGCAAGAACCCGCATGGGAATTGGAGATGAGGCT
GTGTCTGGGCCCTGGAGCTGGGATGACATTGAGTTTGAGCTGCTGACCTGGGATGAGGAAGGAGATTTTG
GAGATCCCTGGTCCAGAATTCCATTTACCTTCTGGGCCAGATACCACCAGAATGCCCGCTCCAGATTCCC
TCAGACCTTTGCCGGTCCCATTATTGGTCCTGGTGGTACAGCCAGTGCCAACTTCGCTGCCAACTTTGGT
GCCATTGGTTTCTTCTGGGTTGAGTGA

Translation (778 aa):
MAQKMDCGAGLLGFQAEASVEDSALLMQTLMEAIQISEAPPTNQATAAASPQSSQPPTANEMADIQVSAA
AARPKSAFKVQNATTKGPNGVYDFSQAHNAKDVPNTQPKAAFKSQNATPKGPNAAYDFSQAATTGELAAN
KSEMAFKAQNATTKVGPNATYNFSQSLNANDLANSRPKTPFKAWNDTTKAPTADTQTQNVNQAKMATSQA
DIETDPGISEPDGATAQTSADGSQAQNLESRTIIRGKRTRKINNLNVEENSSGDQRRAPLAAGTWRSAPV
PVTTQNPPGAPPNVLWQTPLAWQNPSGWQNQTARQTPPARQSPPARQTPPAWQNPVAWQNPVIWPNPVIW
QNPVIWPNPIVWPGPVVWPNPLAWQNPPGWQTPPGWQTPPGWQGPPDWQGPPDWPLPPDWPLPPDWPLPT
DWPLPPDWIPADWPIPPDWQNLRPSPNLRPSPNSRASQNPGAAQPRDVALLQERANKLVKYLMLKDYTKV
PIKRSEMLRDIIREYTDVYPEIIERACFVLEKKFGIQLKEIDKEEHLYILISTPESLAGILGTTKDTPKL
GLLLVILGVIFMNGNRASEAVLWEALRKMGLRPGVRHPLLGDLRKLLTYEFVKQKYLDYRRVPNSNPPEY
EFLWGLRSYHETSKMKVLRFIAEVQKRDPRDWTAQFMEAADEALDALDAAAAEAEARAEARTRMGIGDEA
VSGPWSWDDIEFELLTWDEEGDFGDPWSRIPFTFWARYHQNARSRFPQTFAGPIIGPGGTASANFAANFG
AIGFFWVE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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