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Report for CCDS54926.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54926.1 Public Homo sapiens 5 PCDHGA6 24 110 108 CCDS HistoryNCBI Gene:56109Re-query CCDS DB by CCDS ID:54926.1Re-query CCDS DB by GeneID:56109See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54926.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000517434.3 ENSP00000429601.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000517434.3Link to Ensembl Protein Viewer:ENSP00000429601.2Re-query CCDS DB by Nucleotide ID:ENST00000517434Re-query CCDS DB by Protein ID:ENSP00000429601
Original member Current member NCBI NM_018919.3 NP_061742.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018919.3Link to Protein Sequence:NP_061742.1Re-query CCDS DB by Nucleotide ID:NM_018919Re-query CCDS DB by Protein ID:NP_061742Link to BLAST:NP_061742.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061742.1 932 Q9Y5G7-1 932 100% 0 0

Chromosomal Locations for CCDS 54926.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141374084 141376507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141494807 141494865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141505393 141505481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141510947 141511173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2799 nt):
ATGGCGCCTCCGCAGAGGCATCCGCAGCGCAGCGAGCAGGTCCTGCTCCTCACGCTCCTGGGGACGCTGT
GGGGGGCCGCGGCAGCGCAGATCCGCTACTCTATTCCCGAGGAGCTGGAGAAAGGCTCCTTCGTAGGCAA
CATCGTCAAGGATCTGGGACTGGAGCCCCAGGAGTTGGCGGAGCACGGAGTCCGCATCGTCTCCAGAGGT
AGGATGCAGCTTTTCTCTCTGAATCCGCGAAACGGCAGCTTGGTCACCGCGGGTAGGATAGACCGCGAGG
AGCTCTGTGCTCAGAGCCCGCGGTGTCTGGTGAGTTTTAACATCCTTGTCGAGGATAAACTGAATCTTTA
TCCCGTGGAAGTGGAAATAGTGGACATTAATGACAATACACCCCGATTCTTAAAGGAAGAATTGGAAGTG
AAAATTCTCGAAAACGCAGCTCCATCCTCTCGTTTTCCACTAATGGAGGTCTATGACCCTGATGTGGGAA
TGAACTCCCTTCAGGGATTTAAGCTCAGTGGTAATAGTCACTTCTCAGTGGACGTGCAAAGCGAAGCCCA
TGGGCCCAAGTACCCGGAGCTGGTGCTGGAGGGCACACTGGACCGGGAAGGAGAAGCCGTTTACCGCCTG
GTCCTTACTGCCATGGATGGCGGCGACCCTGTCCGCTCAAGCGTCGCCCAAATTCTGGTAACAGTTCTAG
ATGTGAATGACAACACTCCAATGTTTACTCAGCCTGTCTACCGTGTAAGTGTTCCTGAAAACCTGCCAGT
AGGCACACCAGTGTTGGCAGTGACTGCCACCGACCAGGATGAAGGAGTCCACGGGGAAGTAACTTATTCC
TTTGTGAAGATTACAGAAAAGATCTCACAAATTTTCTGTTTGAATGTTTTGACTGGAGAAATTTCAACTT
CTGCAAATCTAGACTATGAGGACTCGAGTTTTTATGAGCTGGGTGTTGAAGCCCGGGATGGGCCAGGTCT
TCGAGACAGAGCGAAAGTCTTAATAACTATCTTGGATGTCAATGATAATGTACCAGAAGTGGTTGTTACA
TCTGGAAGCAGAACAATTGCTGAAAGTGCACCTCCAGGAACAGTAATCGCCCTTTTTCAAGTGTTCGATC
GAGACTCTGGCCTGAATGGCCTGGTAACCTGTTCCATCCCGAGAAGTCTCCCATTTGAATTGGAAAAATC
AGTTGGCAATTATTATCGATTAGTGACAAATGCAGCTCTAGACCGGGAAGAGGTATTCTTGTACAACATC
ACTGTGACAGCCACGGACAAAGGAACACCACCTCTGTCTACAGAAACAATCATCTCTCTAAATGTGGCAG
ACACCAACGACAACCCGCCCACCTTCCCCCATTCATCCTACTCAGTCTATGTCCTTGAAAACAACCCCAG
GGGTGCCTCCATCTTCTCTGTGAATGCACTGGACCCTGACGTGGACCAGAACGCCCAAGTCTCCTACTCA
CTGGCAGAAGACACCCTCCAGGGGGCGCCCCTGTCCTCCTACGTGTCCATCAACTCCGACACTGGGATTC
TGTACGCCCTGCGCTCCTTCGACTATGAGCAGTTGAGAGACCTACAGCTGTGGGTGACAGCCAGCGACAG
CGGGGACCCGCCTCTTAGCAGCAACGTGTCACTGAGCCTGTTTGTGCTGGACCAGAATGACAATGCGCCC
GAGATCCTGTACCCCGCCCTCCCCACAGACGGTTCCACTGGCGTGGAGCTGGCGCCCCGCTCCGCAGAGC
CCGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACAGAGACTCGGGCCAGAACGCCTGGCTGTCCTACCG
CCTGCTCAAGGCCAGCGAGCCAGGACTTTTCTCAGTGGGCCTGCACACGGGCGAGGTGCGCACGGCGCGC
GCCCTGCTGGACAGAGACGCGCTCAAGCAGAGCCTAGTGGTGGCCGTCCAGGACCACGGCCAGCCCCCTC
TCTCCGCCACTGTCACGCTCACCGTGGCCGTGGCCGACAGGATCCCCGACATCCTGGCCGACCTGGGCAG
CCTCGAGCCCTCCGCCAAACCCAACGATTCGGACCTCACTCTGTACCTGGTGGTGGCGGTGGCCGCGGTC
TCCTGCGTCTTCCTGGCCTTCGTCATCGTGCTGCTGGCGCTCAGACTGCAGCGCTGGCACAAGTCACGCC
TGCTGCAGGCTTCGGGAGGTGGCTTAGCGAGCATGCCCGGCTCGCACTTTGTGGGCGTGGAAGGGGTTCG
GGCTTTCCTGCAGACCTATTCCCACGAGGTCTCACTCACTGCAGACTCGCGTAAGAGTCATCTGATTTTC
CCCCAGCCCAACTATGCCGACACGCTTATCAACCAGGAGAGCTATGAGAAAAGCGAGCCTCTTCTGATAA
CTCAGGATTTACTTGAAACGAAAGGAGAACCCAGGCAACTTCAGCAAGCCCCGCCCAACACGGACTGGCG
TTTCTCTCAGGCCCAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAAC
AACCAGTTTGACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCT
CCACCCTGGGAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCCCAGTTCACCCTGCAGCA
CGTGCCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACACTGACCAACGCAGCTGGCAAG
CGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGGCAAGAAGGAGAAGAAGTAA

Translation (932 aa):
MAPPQRHPQRSEQVLLLTLLGTLWGAAAAQIRYSIPEELEKGSFVGNIVKDLGLEPQELAEHGVRIVSRG
RMQLFSLNPRNGSLVTAGRIDREELCAQSPRCLVSFNILVEDKLNLYPVEVEIVDINDNTPRFLKEELEV
KILENAAPSSRFPLMEVYDPDVGMNSLQGFKLSGNSHFSVDVQSEAHGPKYPELVLEGTLDREGEAVYRL
VLTAMDGGDPVRSSVAQILVTVLDVNDNTPMFTQPVYRVSVPENLPVGTPVLAVTATDQDEGVHGEVTYS
FVKITEKISQIFCLNVLTGEISTSANLDYEDSSFYELGVEARDGPGLRDRAKVLITILDVNDNVPEVVVT
SGSRTIAESAPPGTVIALFQVFDRDSGLNGLVTCSIPRSLPFELEKSVGNYYRLVTNAALDREEVFLYNI
TVTATDKGTPPLSTETIISLNVADTNDNPPTFPHSSYSVYVLENNPRGASIFSVNALDPDVDQNAQVSYS
LAEDTLQGAPLSSYVSINSDTGILYALRSFDYEQLRDLQLWVTASDSGDPPLSSNVSLSLFVLDQNDNAP
EILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTAR
ALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAV
SCVFLAFVIVLLALRLQRWHKSRLLQASGGGLASMPGSHFVGVEGVRAFLQTYSHEVSLTADSRKSHLIF
PQPNYADTLINQESYEKSEPLLITQDLLETKGEPRQLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN
NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK
RDGKAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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