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Report for CCDS86994.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86994.1 Public Homo sapiens 21 PCBP3 24 110 108 CCDS HistoryNCBI Gene:54039Re-query CCDS DB by CCDS ID:86994.1Re-query CCDS DB by GeneID:54039See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86994.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400309.5 ENSP00000383164.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400309.5Link to Ensembl Protein Viewer:ENSP00000383164.1Re-query CCDS DB by Nucleotide ID:ENST00000400309Re-query CCDS DB by Protein ID:ENSP00000383164
Original member Current member NCBI NM_001348238.2 NP_001335167.1 Accepted alive Link to Nucleotide Sequence:NM_001348238.2Link to Protein Sequence:NP_001335167.1Re-query CCDS DB by Nucleotide ID:NM_001348238Re-query CCDS DB by Protein ID:NP_001335167Link to BLAST:NP_001335167.1
Original member Current member NCBI NM_001382278.1 NP_001369207.1 Accepted alive Link to Nucleotide Sequence:NM_001382278.1Link to Protein Sequence:NP_001369207.1Re-query CCDS DB by Nucleotide ID:NM_001382278Re-query CCDS DB by Protein ID:NP_001369207Link to BLAST:NP_001369207.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335167.1 370 P57721-4 370 100% 0 0
NP_001369207.1 370 P57721-4 370 100% 0 0

Chromosomal Locations for CCDS 86994.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 45850086 45850095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45896208 45896362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45899599 45899622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45900591 45900623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45900997 45901113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45909355 45909486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45910902 45911030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45913951 45914025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45917588 45917629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45929920 45929995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45930786 45930845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45935253 45935305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45940030 45940199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45941670 45941706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGGGGGAAGGTGACGCCTTCTGGGCCCCATCTGTCCTTCCTCACAGCACCCTCAGCACCTTAAGCCACC
ACCCTCAGCCACAATTTGGCAGAAGGATGGAGTCCAAGGTCTCAGAAGGTGGCCTGAATGTGACCCTCAC
CATCCGCCTGCTGATGCATGGAAAGGAAGTTGGAAGCATCATCGGGAAGAAAGGAGAAACTGTGAAGAAG
ATGCGTGAGGAGAGTGGTGCAAGGATCAACATCTCAGAGGGAAACTGCCCAGAGAGGATTGTGACCATCA
CAGGCCCCACAGACGCCATCTTCAAGGCCTTTGCCATGATCGCATACAAGTTTGAGGAGGATATCATCAA
CTCCATGAGCAACAGCCCTGCCACCAGCAAGCCCCCAGTGACGCTGAGGCTGGTGGTGCCTGCCAGCCAG
TGTGGGTCCCTGATCGGCAAAGGAGGCTCCAAGATCAAGGAGATCAGGGAGTCCACAGGTGCCCAGGTGC
AGGTGGCTGGGGACATGCTGCCCAACTCCACGGAGCGAGCGGTGACCATCTCGGGGACCCCAGATGCCAT
CATCCAGTGCGTCAAGCAGATCTGTGTGGTCATGCTGGAGTCCCCACCGAAAGGTGCCACCATTCCCTAC
CGCCCAAAGCCCGCCTCCACCCCTGTCATTTTTGCAGGTGGTCAGGCCTACACAATCCAGGGACAGTATG
CCATCCCTCACCCGGATTTGACCAAGCTCCACCAGTTGGCCATGCAGCAAACCCCCTTTCCTCCCCTCGG
ACAGACCAACCCCGCTTTCCCCGGAGAAAAGCTGCCTTTACACTCCTCCGAAGAAGCTCAAAATCTGATG
GGCCAGTCATCAGGTCTGGACGCCAGCCCACCGGCCAGCACTCATGAGCTCACCATTCCCAATGATCTAA
TAGGCTGCATAATTGGACGCCAAGGGACCAAAATCAATGAAATTCGACAGATGTCTGGAGCTCAGATCAA
AATCGCCAACGCCACGGAAGGGTCCTCAGAGCGTCAGATCACCATCACGGGGACCCCGGCCAACATCAGC
CTTGCCCAGTATCTCATCAACGCCAGGCTGACGTCCGAGGTCACCGGGATGGGCACGCTGTAA

Translation (370 aa):
MGEGDAFWAPSVLPHSTLSTLSHHPQPQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKK
MREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQ
CGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY
RPKPASTPVIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLM
GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANIS
LAQYLINARLTSEVTGMGTL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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