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Report for CCDS2587.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2587.1 Public Homo sapiens 3 CIDEC 24 110 108 CCDS HistoryNCBI Gene:63924Re-query CCDS DB by CCDS ID:2587.1Re-query CCDS DB by GeneID:63924See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2587.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336832.7 ENSP00000338642.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336832.7Link to Ensembl Protein Viewer:ENSP00000338642.2Re-query CCDS DB by Nucleotide ID:ENST00000336832Re-query CCDS DB by Protein ID:ENSP00000338642
Original member Current member EBI ENST00000675828.1 ENSP00000502377.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675828.1Link to Ensembl Protein Viewer:ENSP00000502377.1Re-query CCDS DB by Nucleotide ID:ENST00000675828Re-query CCDS DB by Protein ID:ENSP00000502377
Original member Current member EBI ENST00000679265.1 ENSP00000504614.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679265.1Link to Ensembl Protein Viewer:ENSP00000504614.1Re-query CCDS DB by Nucleotide ID:ENST00000679265Re-query CCDS DB by Protein ID:ENSP00000504614
Original member Current member NCBI NM_001199552.2 NP_001186481.1 Accepted alive Link to Nucleotide Sequence:NM_001199552.2Link to Protein Sequence:NP_001186481.1Re-query CCDS DB by Nucleotide ID:NM_001199552Re-query CCDS DB by Protein ID:NP_001186481Link to BLAST:NP_001186481.1
Original member Current member NCBI NM_001321142.2 NP_001308071.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001321142.2Link to Protein Sequence:NP_001308071.1Re-query CCDS DB by Nucleotide ID:NM_001321142Re-query CCDS DB by Protein ID:NP_001308071Link to BLAST:NP_001308071.1
Original member Current member NCBI NM_001378491.1 NP_001365420.1 Accepted alive Link to Nucleotide Sequence:NM_001378491.1Link to Protein Sequence:NP_001365420.1Re-query CCDS DB by Nucleotide ID:NM_001378491Re-query CCDS DB by Protein ID:NP_001365420Link to BLAST:NP_001365420.1
Original member Current member NCBI NM_022094.3 NP_071377.2 Accepted alive Link to Nucleotide Sequence:NM_022094.3Link to Protein Sequence:NP_071377.2Re-query CCDS DB by Nucleotide ID:NM_022094Re-query CCDS DB by Protein ID:NP_071377Link to BLAST:NP_071377.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186481.1 238 Q96AQ7-1 238 100% 0 0
NP_001308071.1 238 Q96AQ7-1 238 100% 0 0
NP_001365420.1 238 Q96AQ7-1 238 100% 0 0
NP_071377.2 238 Q96AQ7-1 238 100% 0 0

Chromosomal Locations for CCDS 2587.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 9867134 9867296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9869882 9870069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9870164 9870322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9877066 9877219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9878434 9878486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGAATACGCCATGAAGTCCCTTAGCCTTCTCTACCCCAAGTCCCTCTCCAGGCATGTGTCAGTGCGTA
CCTCTGTGGTGACCCAGCAGCTGCTGTCGGAGCCCAGCCCCAAGGCCCCCAGGGCCCGGCCCTGCCGCGT
AAGCACGGCGGATCGAAGCGTGAGGAAGGGCATCATGGCTTACAGTCTTGAGGACCTCCTCCTCAAGGTC
CGGGACACTCTGATGCTGGCAGACAAGCCCTTCTTCCTGGTGCTGGAGGAAGATGGCACAACTGTAGAGA
CAGAAGAGTACTTCCAAGCCCTGGCAGGGGATACAGTGTTCATGGTCCTCCAGAAGGGGCAGAAATGGCA
GCCCCCATCAGAACAGGGGACAAGGCACCCACTGTCCCTCTCCCATAAGCCTGCCAAGAAGATTGATGTG
GCCCGTGTAACGTTTGATCTGTACAAGCTGAACCCACAGGACTTCATTGGCTGCCTGAACGTGAAGGCGA
CTTTTTATGATACATACTCCCTTTCCTATGATCTGCACTGCTGTGGGGCCAAGCGCATCATGAAGGAAGC
TTTCCGCTGGGCCCTCTTCAGCATGCAGGCCACAGGCCACGTACTGCTTGGCACCTCCTGTTACCTGCAG
CAGCTCCTCGATGCTACGGAGGAAGGGCAGCCCCCCAAGGGCAAGGCCTCATCCCTTATCCCGACCTGTC
TGAAGATACTGCAGTGA

Translation (238 aa):
MEYAMKSLSLLYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPCRVSTADRSVRKGIMAYSLEDLLLKV
RDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVLQKGQKWQPPSEQGTRHPLSLSHKPAKKIDV
ARVTFDLYKLNPQDFIGCLNVKATFYDTYSLSYDLHCCGAKRIMKEAFRWALFSMQATGHVLLGTSCYLQ
QLLDATEEGQPPKGKASSLIPTCLKILQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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