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Report for CCDS3634.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3634.1 Public Homo sapiens 4 SNCA 24 110 108 CCDS HistoryNCBI Gene:6622Re-query CCDS DB by CCDS ID:3634.1Re-query CCDS DB by GeneID:6622See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3634.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336904.7 ENSP00000338345.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336904.7Link to Ensembl Protein Viewer:ENSP00000338345.3Re-query CCDS DB by Nucleotide ID:ENST00000336904Re-query CCDS DB by Protein ID:ENSP00000338345
Original member Current member EBI ENST00000394986.5 ENSP00000378437.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394986.5Link to Ensembl Protein Viewer:ENSP00000378437.1Re-query CCDS DB by Nucleotide ID:ENST00000394986Re-query CCDS DB by Protein ID:ENSP00000378437
Original member Current member EBI ENST00000394991.8 ENSP00000378442.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394991.8Link to Ensembl Protein Viewer:ENSP00000378442.4Re-query CCDS DB by Nucleotide ID:ENST00000394991Re-query CCDS DB by Protein ID:ENSP00000378442
Original member Current member EBI ENST00000506244.5 ENSP00000422238.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506244.5Link to Ensembl Protein Viewer:ENSP00000422238.1Re-query CCDS DB by Nucleotide ID:ENST00000506244Re-query CCDS DB by Protein ID:ENSP00000422238
Original member Current member EBI ENST00000508895.5 ENSP00000426955.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000508895.5Link to Ensembl Protein Viewer:ENSP00000426955.1Re-query CCDS DB by Nucleotide ID:ENST00000508895Re-query CCDS DB by Protein ID:ENSP00000426955
Original member Current member EBI ENST00000673718.1 ENSP00000500990.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673718.1Link to Ensembl Protein Viewer:ENSP00000500990.1Re-query CCDS DB by Nucleotide ID:ENST00000673718Re-query CCDS DB by Protein ID:ENSP00000500990
Original member Current member NCBI NM_000345.4 NP_000336.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000345.4Link to Protein Sequence:NP_000336.1Re-query CCDS DB by Nucleotide ID:NM_000345Re-query CCDS DB by Protein ID:NP_000336Link to BLAST:NP_000336.1
Original member Current member NCBI NM_001146054.2 NP_001139526.1 Accepted alive Link to Nucleotide Sequence:NM_001146054.2Link to Protein Sequence:NP_001139526.1Re-query CCDS DB by Nucleotide ID:NM_001146054Re-query CCDS DB by Protein ID:NP_001139526Link to BLAST:NP_001139526.1
Original member Current member NCBI NM_001146055.2 NP_001139527.1 Accepted alive Link to Nucleotide Sequence:NM_001146055.2Link to Protein Sequence:NP_001139527.1Re-query CCDS DB by Nucleotide ID:NM_001146055Re-query CCDS DB by Protein ID:NP_001139527Link to BLAST:NP_001139527.1
Original member Current member NCBI NM_001375285.1 NP_001362214.1 Accepted alive Link to Nucleotide Sequence:NM_001375285.1Link to Protein Sequence:NP_001362214.1Re-query CCDS DB by Nucleotide ID:NM_001375285Re-query CCDS DB by Protein ID:NP_001362214Link to BLAST:NP_001362214.1
Original member Current member NCBI NM_001375286.1 NP_001362215.1 Accepted alive Link to Nucleotide Sequence:NM_001375286.1Link to Protein Sequence:NP_001362215.1Re-query CCDS DB by Nucleotide ID:NM_001375286Re-query CCDS DB by Protein ID:NP_001362215Link to BLAST:NP_001362215.1
Original member Current member NCBI NM_001375287.1 NP_001362216.1 Accepted alive Link to Nucleotide Sequence:NM_001375287.1Link to Protein Sequence:NP_001362216.1Re-query CCDS DB by Nucleotide ID:NM_001375287Re-query CCDS DB by Protein ID:NP_001362216Link to BLAST:NP_001362216.1
Original member Current member NCBI NM_001375288.1 NP_001362217.1 Accepted alive Link to Nucleotide Sequence:NM_001375288.1Link to Protein Sequence:NP_001362217.1Re-query CCDS DB by Nucleotide ID:NM_001375288Re-query CCDS DB by Protein ID:NP_001362217Link to BLAST:NP_001362217.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000336.1 140 P37840-1 140 100% 0 0
NP_001139526.1 140 P37840-1 140 100% 0 0
NP_001139527.1 140 P37840-1 140 100% 0 0
NP_001362214.1 140 P37840-1 140 100% 0 0
NP_001362215.1 140 P37840-1 140 100% 0 0
NP_001362216.1 140 P37840-1 140 100% 0 0
NP_001362217.1 140 P37840-1 140 100% 0 0

Chromosomal Locations for CCDS 3634.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 89726628 89726660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 89729194 89729277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 89822246 89822388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 89828143 89828184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 89835547 89835667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGGATGTATTCATGAAAGGACTTTCAAAGGCCAAGGAGGGAGTTGTGGCTGCTGCTGAGAAAACCAAAC
AGGGTGTGGCAGAAGCAGCAGGAAAGACAAAAGAGGGTGTTCTCTATGTAGGCTCCAAAACCAAGGAGGG
AGTGGTGCATGGTGTGGCAACAGTGGCTGAGAAGACCAAAGAGCAAGTGACAAATGTTGGAGGAGCAGTG
GTGACGGGTGTGACAGCAGTAGCCCAGAAGACAGTGGAGGGAGCAGGGAGCATTGCAGCAGCCACTGGCT
TTGTCAAAAAGGACCAGTTGGGCAAGAATGAAGAAGGAGCCCCACAGGAAGGAATTCTGGAAGATATGCC
TGTGGATCCTGACAATGAGGCTTATGAAATGCCTTCTGAGGAAGGGTATCAAGACTACGAACCTGAAGCC
TAA

Translation (140 aa):
MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAV
VTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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