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Report for CCDS35279.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35279.1 Public Homo sapiens X MAGED1 24 110 108 CCDS HistoryNCBI Gene:9500Re-query CCDS DB by CCDS ID:35279.1Re-query CCDS DB by GeneID:9500See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35279.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375695.2 ENSP00000364847.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375695.2Link to Ensembl Protein Viewer:ENSP00000364847.2Re-query CCDS DB by Nucleotide ID:ENST00000375695Re-query CCDS DB by Protein ID:ENSP00000364847
Original member Current member NCBI NM_001005333.2 NP_001005333.1 Accepted alive Link to Nucleotide Sequence:NM_001005333.2Link to Protein Sequence:NP_001005333.1Re-query CCDS DB by Nucleotide ID:NM_001005333Re-query CCDS DB by Protein ID:NP_001005333Link to BLAST:NP_001005333.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005333.1 834 Q9Y5V3-2 834 100% 0 0

Chromosomal Locations for CCDS 35279.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 51894305 51894349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51894627 51894794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51895053 51895760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51896409 51897077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51897208 51897271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51897547 51897626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51897795 51897886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51898114 51898193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51898285 51898327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51898581 51898643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51900182 51900296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 51901553 51901930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2505 nt):
ATGGCTCAGAAAATGGACTGTGGTGCGGGCCTCCTCGGCTTCCAGAATCCTGACGCTTGTAGAGCAGTCT
GTCACCCCCTCCCCCAGCCTCCTGCCTCCACCCTCCCTCTTTCTGCATTCCCCACTCTGTGCGACCCCCC
TTATTCTCAACTCCGCGATCCGCCTGCCGTCCTGAGCTGCTACTGCACGCCTCTTGGAGCGTCCCCGGCT
CCTGCTGAGGCCTCCGTAGAAGACAGCGCCTTGCTTATGCAGACCTTGATGGAGGCCATCCAGATCTCAG
AGGCTCCACCTACTAACCAGGCCACCGCAGCTGCTAGTCCCCAGAGTTCACAGCCCCCAACTGCCAATGA
GATGGCTGACATTCAGGTTTCAGCAGCTGCCGCTAGGCCTAAGTCAGCCTTTAAAGTCCAGAATGCCACC
ACAAAAGGCCCAAATGGTGTCTATGATTTCTCTCAGGCTCATAATGCCAAGGATGTGCCCAACACGCAGC
CCAAGGCAGCCTTTAAGTCCCAAAATGCTACCCCAAAGGGTCCAAATGCTGCCTATGATTTTTCCCAGGC
AGCAACCACTGGTGAGTTAGCTGCTAACAAGTCTGAGATGGCCTTCAAGGCCCAGAATGCCACTACTAAA
GTGGGCCCAAATGCCACCTACAATTTCTCTCAGTCTCTCAATGCCAATGACCTGGCCAACAGCAGGCCTA
AGACCCCTTTCAAGGCTTGGAATGATACCACTAAGGCCCCAACAGCTGATACCCAGACCCAGAATGTAAA
TCAGGCCAAAATGGCCACTTCCCAGGCTGACATAGAGACCGACCCAGGTATCTCTGAACCTGACGGTGCA
ACTGCACAGACATCAGCAGATGGTTCCCAGGCTCAGAATCTGGAGTCCCGGACAATAATTCGGGGCAAGA
GGACCCGCAAGATTAATAACTTGAATGTTGAAGAGAACAGCAGTGGGGATCAGAGGCGGGCCCCACTGGC
TGCAGGGACCTGGAGGTCTGCACCAGTTCCAGTGACCACTCAGAACCCACCTGGCGCACCCCCCAATGTG
CTCTGGCAGACGCCATTGGCTTGGCAGAACCCCTCAGGCTGGCAAAACCAGACAGCCAGGCAGACCCCAC
CAGCACGTCAGAGCCCTCCAGCTAGGCAGACCCCACCAGCCTGGCAGAACCCAGTCGCTTGGCAGAACCC
AGTGATTTGGCCAAACCCAGTAATCTGGCAGAACCCAGTGATCTGGCCAAACCCCATTGTCTGGCCCGGC
CCTGTTGTCTGGCCGAATCCACTGGCCTGGCAGAATCCACCTGGATGGCAGACTCCACCTGGATGGCAGA
CCCCACCGGGCTGGCAGGGTCCTCCAGACTGGCAAGGTCCTCCTGACTGGCCGCTACCACCCGACTGGCC
ACTGCCACCTGATTGGCCACTTCCCACTGACTGGCCACTACCACCTGACTGGATCCCCGCTGATTGGCCA
ATTCCACCTGACTGGCAGAACCTGCGCCCCTCGCCTAACCTGCGCCCTTCTCCCAACTCGCGTGCCTCAC
AGAACCCAGGTGCTGCACAGCCCCGAGATGTGGCCCTTCTTCAGGAAAGAGCAAATAAGTTGGTCAAGTA
CTTGATGCTTAAGGACTACACAAAGGTGCCCATCAAGCGCTCAGAAATGCTGAGAGATATCATCCGTGAA
TACACTGATGTTTATCCAGAAATCATTGAACGTGCATGCTTTGTCCTAGAGAAGAAATTTGGGATTCAAC
TGAAAGAAATTGACAAAGAAGAACACCTGTATATTCTCATCAGTACCCCCGAGTCCCTGGCTGGCATACT
GGGAACGACCAAAGACACACCCAAGCTCGGTCTCCTCTTGGTGATTCTGGGTGTCATCTTCATGAATGGC
AACCGTGCCAGTGAGGCTGTCCTCTGGGAGGCACTACGCAAGATGGGACTGCGTCCTGGGGTGAGACATC
CCCTCCTTGGAGATCTAAGGAAACTTCTCACCTATGAGTTTGTAAAGCAGAAATACCTGGACTACAGACG
AGTGCCCAACAGCAACCCCCCGGAGTATGAGTTCCTCTGGGGCCTCCGTTCCTACCATGAGACTAGCAAG
ATGAAAGTGCTGAGATTCATTGCAGAGGTTCAGAAAAGAGACCCTCGTGACTGGACTGCACAGTTCATGG
AGGCTGCAGATGAGGCCTTGGATGCTCTGGATGCTGCTGCAGCTGAGGCCGAAGCCCGGGCTGAAGCAAG
AACCCGCATGGGAATTGGAGATGAGGCTGTGTCTGGGCCCTGGAGCTGGGATGACATTGAGTTTGAGCTG
CTGACCTGGGATGAGGAAGGAGATTTTGGAGATCCCTGGTCCAGAATTCCATTTACCTTCTGGGCCAGAT
ACCACCAGAATGCCCGCTCCAGATTCCCTCAGACCTTTGCCGGTCCCATTATTGGTCCTGGTGGTACAGC
CAGTGCCAACTTCGCTGCCAACTTTGGTGCCATTGGTTTCTTCTGGGTTGAGTGA

Translation (834 aa):
MAQKMDCGAGLLGFQNPDACRAVCHPLPQPPASTLPLSAFPTLCDPPYSQLRDPPAVLSCYCTPLGASPA
PAEASVEDSALLMQTLMEAIQISEAPPTNQATAAASPQSSQPPTANEMADIQVSAAAARPKSAFKVQNAT
TKGPNGVYDFSQAHNAKDVPNTQPKAAFKSQNATPKGPNAAYDFSQAATTGELAANKSEMAFKAQNATTK
VGPNATYNFSQSLNANDLANSRPKTPFKAWNDTTKAPTADTQTQNVNQAKMATSQADIETDPGISEPDGA
TAQTSADGSQAQNLESRTIIRGKRTRKINNLNVEENSSGDQRRAPLAAGTWRSAPVPVTTQNPPGAPPNV
LWQTPLAWQNPSGWQNQTARQTPPARQSPPARQTPPAWQNPVAWQNPVIWPNPVIWQNPVIWPNPIVWPG
PVVWPNPLAWQNPPGWQTPPGWQTPPGWQGPPDWQGPPDWPLPPDWPLPPDWPLPTDWPLPPDWIPADWP
IPPDWQNLRPSPNLRPSPNSRASQNPGAAQPRDVALLQERANKLVKYLMLKDYTKVPIKRSEMLRDIIRE
YTDVYPEIIERACFVLEKKFGIQLKEIDKEEHLYILISTPESLAGILGTTKDTPKLGLLLVILGVIFMNG
NRASEAVLWEALRKMGLRPGVRHPLLGDLRKLLTYEFVKQKYLDYRRVPNSNPPEYEFLWGLRSYHETSK
MKVLRFIAEVQKRDPRDWTAQFMEAADEALDALDAAAAEAEARAEARTRMGIGDEAVSGPWSWDDIEFEL
LTWDEEGDFGDPWSRIPFTFWARYHQNARSRFPQTFAGPIIGPGGTASANFAANFGAIGFFWVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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