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Report for CCDS3731.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3731.1 Public Homo sapiens 4 SPRY1 24 110 108 CCDS HistoryNCBI Gene:10252Re-query CCDS DB by CCDS ID:3731.1Re-query CCDS DB by GeneID:10252See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3731.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339241.1 ENSP00000343785.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000339241.1Link to Ensembl Protein Viewer:ENSP00000343785.1Re-query CCDS DB by Nucleotide ID:ENST00000339241Re-query CCDS DB by Protein ID:ENSP00000343785
Original member Current member EBI ENST00000394339.2 ENSP00000377871.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394339.2Link to Ensembl Protein Viewer:ENSP00000377871.2Re-query CCDS DB by Nucleotide ID:ENST00000394339Re-query CCDS DB by Protein ID:ENSP00000377871
Original member Current member EBI ENST00000622283.1 ENSP00000480540.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622283.1Link to Ensembl Protein Viewer:ENSP00000480540.1Re-query CCDS DB by Nucleotide ID:ENST00000622283Re-query CCDS DB by Protein ID:ENSP00000480540
Original member Current member EBI ENST00000610581.4 ENSP00000481675.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000610581.4Link to Ensembl Protein Viewer:ENSP00000481675.1Re-query CCDS DB by Nucleotide ID:ENST00000610581Re-query CCDS DB by Protein ID:ENSP00000481675
Original member Current member EBI ENST00000651917.1 ENSP00000498292.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651917.1Link to Ensembl Protein Viewer:ENSP00000498292.1Re-query CCDS DB by Nucleotide ID:ENST00000651917Re-query CCDS DB by Protein ID:ENSP00000498292
Original member Current member NCBI NM_001258038.2 NP_001244967.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001258038.2Link to Protein Sequence:NP_001244967.1Re-query CCDS DB by Nucleotide ID:NM_001258038Re-query CCDS DB by Protein ID:NP_001244967Link to BLAST:NP_001244967.1
Original member Current member NCBI NM_001258039.1 NP_001244968.1 Accepted alive Link to Nucleotide Sequence:NM_001258039.1Link to Protein Sequence:NP_001244968.1Re-query CCDS DB by Nucleotide ID:NM_001258039Re-query CCDS DB by Protein ID:NP_001244968Link to BLAST:NP_001244968.1
Original member Current member NCBI NM_001375410.1 NP_001362339.1 Accepted alive Link to Nucleotide Sequence:NM_001375410.1Link to Protein Sequence:NP_001362339.1Re-query CCDS DB by Nucleotide ID:NM_001375410Re-query CCDS DB by Protein ID:NP_001362339Link to BLAST:NP_001362339.1
Original member Current member NCBI NM_005841.3 NP_005832.1 Accepted alive Link to Nucleotide Sequence:NM_005841.3Link to Protein Sequence:NP_005832.1Re-query CCDS DB by Nucleotide ID:NM_005841Re-query CCDS DB by Protein ID:NP_005832Link to BLAST:NP_005832.1
Original member Current member NCBI NM_199327.3 NP_955359.1 Accepted alive Link to Nucleotide Sequence:NM_199327.3Link to Protein Sequence:NP_955359.1Re-query CCDS DB by Nucleotide ID:NM_199327Re-query CCDS DB by Protein ID:NP_955359Link to BLAST:NP_955359.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001244967.1 319 O43609 319 100% 0 0
NP_001244968.1 319 O43609 319 100% 0 0
NP_001362339.1 319 O43609 319 100% 0 0
NP_005832.1 319 O43609 319 100% 0 0
NP_955359.1 319 O43609 319 100% 0 0

Chromosomal Locations for CCDS 3731.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 123401592 123402551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGGATCCCCAAAATCAACATGGCAGTGGCAGTTCGTTAGTTGTGATCCAGCAGCCTTCTTTGGATAGCC
GTCAGAGATTAGACTATGAGAGAGAGATTCAGCCTACTGCTATTTTGTCCTTAGACCAGATCAAGGCCAT
AAGAGGCAGCAATGAATACACAGAAGGGCCTTCGGTGGTGAAAAGACCTGCTCCTCGGACAGCACCAAGA
CAAGAAAAGCATGAAAGGACTCATGAAATCATACCAATTAATGTGAATAATAACTACGAGCACAGACACA
CAAGCCACCTGGGACATGCAGTACTCCCAAGTAATGCCAGGGGCCCCATTTTGAGCAGATCAACCAGCAC
TGGAAGTGCAGCCAGCTCTGGGAGCAACAGCAGTGCCTCTTCTGAACAGGGACTGTTAGGAAGGTCACCA
CCAACCAGACCAGTCCCTGGTCATAGGTCTGAAAGGGCAATCCGGACCCAGCCCAAGCAACTGATTGTGG
ATGACTTGAAGGGTTCCTTGAAAGAGGACCTGACACAGCACAAGTTCATTTGTGAACAGTGTGGGAAGTG
CAAGTGTGGAGAATGCACTGCTCCCAGGACCCTACCATCCTGTTTGGCCTGTAACCGGCAGTGCCTTTGC
TCTGCTGAGAGCATGGTGGAATATGGAACCTGCATGTGCTTAGTCAAGGGCATCTTCTACCACTGCTCCA
ATGACGACGAAGGGGATTCCTATTCAGATAATCCTTGCTCCTGTTCACAATCACACTGCTGCTCTAGATA
CCTGTGTATGGGAGCCATGTCTTTATTTTTACCTTGCTTACTCTGTTATCCTCCTGCTAAAGGATGCCTG
AAGCTGTGCAGGAGGTGTTATGACTGGATCCATCGCCCAGGGTGCAGATGTAAGAACTCCAACACTGTCT
ATTGTAAGCTGGAGAGCTGCCCCTCCCGGGGTCAGGGTAAACCATCATGA

Translation (319 aa):
MDPQNQHGSGSSLVVIQQPSLDSRQRLDYEREIQPTAILSLDQIKAIRGSNEYTEGPSVVKRPAPRTAPR
QEKHERTHEIIPINVNNNYEHRHTSHLGHAVLPSNARGPILSRSTSTGSAASSGSNSSASSEQGLLGRSP
PTRPVPGHRSERAIRTQPKQLIVDDLKGSLKEDLTQHKFICEQCGKCKCGECTAPRTLPSCLACNRQCLC
SAESMVEYGTCMCLVKGIFYHCSNDDEGDSYSDNPCSCSQSHCCSRYLCMGAMSLFLPCLLCYPPAKGCL
KLCRRCYDWIHRPGCRCKNSNTVYCKLESCPSRGQGKPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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