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Report for CCDS59488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59488.1 Public Homo sapiens 5 MARCHF6 24 110 108 CCDS HistoryNCBI Gene:10299Re-query CCDS DB by CCDS ID:59488.1Re-query CCDS DB by GeneID:10299See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59488.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000503788.5 ENSP00000425930.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503788.5Link to Ensembl Protein Viewer:ENSP00000425930.1Re-query CCDS DB by Nucleotide ID:ENST00000503788Re-query CCDS DB by Protein ID:ENSP00000425930
Original member Current member NCBI NM_001270661.2 NP_001257590.1 Accepted alive Link to Nucleotide Sequence:NM_001270661.2Link to Protein Sequence:NP_001257590.1Re-query CCDS DB by Nucleotide ID:NM_001270661Re-query CCDS DB by Protein ID:NP_001257590Link to BLAST:NP_001257590.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257590.1 805 O60337-6 805 100% 0 0

Chromosomal Locations for CCDS 59488.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 10353899 10353917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10386994 10387066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10390332 10390500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10391542 10391731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10394082 10394143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10394753 10394785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10397293 10397344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10400784 10400842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10402059 10402139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10402384 10402452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10402533 10402607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10403407 10403541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10405558 10405677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10407102 10407202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10410139 10410276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10411333 10411537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10414433 10414502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10415488 10415669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10417270 10417404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10423735 10423824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10426390 10426522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10429893 10430028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10433594 10433684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2418 nt):
ATGGACACCGCGGAGGAAGGCCGCATCTACAAGTGCTTGTTTACTGGCTCCGTGAGCTCACTACTGACGC
TGCCATTAGATATGCTGTCAACGGAAAATTTGTTGGCAGATTGTTTGCAGGGTTGTTTTGTGGTGACGTG
CACACTGTGTGCATTCATCAGCCTGGTGTGGTTGAGAGAGCAGATAGTCCATGGGGGAGCACCAATTTGG
TTGGAGCATGCTGCCCCACCGTTCAATGCTGCGGGGCATCACCAAAATGAGGCTCCAGCAGGAGGAAATG
GTGCAGAAAATGTTGCTGCTGATCAGCCTGCTAACCCACCAGCTGAGAACGCAGTGGTGGGGGAAAACCC
TGATGCCCAGGATGACCAGGCAGAAGAGGAGGAGGAGGACAATGAGGAGGAAGATGACGCTGGTGTGGAG
GATGCGGCAGATGCTAATAACGGAGCCCAGGATGACATGAATTGGAATGCTTTAGAATGGGACCGAGCTG
CTGAAGAGCTTACATGGGAAAGAATGCTAGGACTTGATGGATCACTAGTTTTTCTGGAACATGTCTTCTG
GGTGGTATCTTTAAATACACTGTTCATTCTTGTTTTTGCATTTTGCCCTTACCATATTGGTCATTTCTCC
CTTGTTGGTTTGGGATTTGAAGAACACGTCCAAGCATCTCATTTTGAAGGCCTAATCACAACCATAGTTG
GGTATATACTTTTAGCAATAACACTGATAATTTGTCATGGCTTGGCAACTCTTGTGAAATTTCATAGATC
TCGTCGCTTACTGGGAGTCTGCTATATTGTTGTTAAGGTCTCTTTGTTAGTGGTGGTAGAAATTGGAGTA
TTCCCTCTCATTTGTGGTTGGTGGCTGGATATCTGTTCCTTGGAAATGTTTGATGCTACTCTGAAAGATC
GAGAACTGAGCTTTCAGTCGGCTCCAGGTACTACCATGTTTCTGCATTGGCTAGTGGGAATGGTATATGT
CTTCTACTTTGCCTCCTTCATTCTACTACTGAGAGAGGTACTTCGACCTGGTGTCCTGTGGTTTCTAAGG
AATTTGAATGATCCAGATTTCAATCCAGTACAGGAAATGATCCATTTGCCAATATATAGGCATCTCCGAA
GATTTATTTTGTCAGTGATTGTCTTTGGCTCCATTGTCCTCCTGATGCTTTGGCTTCCTATACGTATAAT
TAAGAGTGTGCTGCCTAATTTTCTTCCATACAATGTCATGCTCTACAGTGATGCTCCAGTGAGTGAACTG
TCCCTCGAGCTGCTTCTGCTTCAGGTTGTCTTGCCAGCATTACTCGAACAGGGACACACGAGGCAGTGGC
TGAAGGGGCTGGTGCGAGCGTGGACTGTGACCGCCGGATACTTGCTGGATCTTCATTCTTATTTATTGGG
AGACCAGGAAGAAAATGAAAACAGTGCAAATCAACAAGTTAACAATAATCAGCATGCTCGAAATAACAAC
GCTATTCCTGTGGTGGGAGAAGGCCTTCATGCAGCCCACCAAGCCATACTCCAGCAGGGAGGGCCTGTTG
GCTTTCAGCCTTACCGCCGACCTTTAAATTTTCCACTCAGGATATTTCTGTTGATTGTCTTCATGTGTAT
AACATTACTGATTGCCAGCCTCATCTGCCTTACTTTACCAGTATTTGCTGGCCGTTGGTTAATGTCGTTT
TGGACGGGGACTGCCAAAATCCATGAGCTCTACACAGCTGCTTGTGGTCTCTATGTTTGCTGGCTAACCA
TAAGGGCTGTGACGGTGATGGTGGCATGGATGCCTCAGGGACGCAGAGTGATCTTCCAGAAGGTTAAAGA
GTGGTCTCTCATGATCATGAAGACTTTGATAGTTGCGGTGCTGTTGGCTGGAGTTGTCCCTCTCCTTCTG
GGGCTCCTGTTTGAGCTGGTCATTGTGGCTCCCCTGAGGGTTCCCTTGGATCAGACTCCTCTTTTTTATC
CATGGCAGGACTGGGCACTTGGAGTCCTGCATGCCAAAATCATTGCAGCTATAACATTGATGGGTCCTCA
GTGGTGGTTGAAAACTGTAATTGAACAGGTTTACGCAAATGGCATCCGGAACATTGACCTTCACTATATT
GTTCGTAAACTGGCAGCTCCCGTGATCTCTGTGCTGTTGCTTTCCCTGTGTGTACCTTATGTCATAGCTT
CTGGTGTTGTTCCTTTACTAGGTGTTACTGCGGAAATGCAAAACTTAGTCCATCGGCGGATTTATCCATT
TTTACTGATGGTCGTGGTATTGATGGCAATTTTGTCCTTCCAAGTCCGCCAGTTTAAGCGCCTTTATGAA
CATATTAAAAATGACAAGTACCTTGTGGGTCAACGACTCGTGAACTACGAACGGAAATCTGGCAAACAAG
GCTCATCTCCACCACCTCCACAGTCATCCCAAGAATAA

Translation (805 aa):
MDTAEEGRIYKCLFTGSVSSLLTLPLDMLSTENLLADCLQGCFVVTCTLCAFISLVWLREQIVHGGAPIW
LEHAAPPFNAAGHHQNEAPAGGNGAENVAADQPANPPAENAVVGENPDAQDDQAEEEEEDNEEEDDAGVE
DAADANNGAQDDMNWNALEWDRAAEELTWERMLGLDGSLVFLEHVFWVVSLNTLFILVFAFCPYHIGHFS
LVGLGFEEHVQASHFEGLITTIVGYILLAITLIICHGLATLVKFHRSRRLLGVCYIVVKVSLLVVVEIGV
FPLICGWWLDICSLEMFDATLKDRELSFQSAPGTTMFLHWLVGMVYVFYFASFILLLREVLRPGVLWFLR
NLNDPDFNPVQEMIHLPIYRHLRRFILSVIVFGSIVLLMLWLPIRIIKSVLPNFLPYNVMLYSDAPVSEL
SLELLLLQVVLPALLEQGHTRQWLKGLVRAWTVTAGYLLDLHSYLLGDQEENENSANQQVNNNQHARNNN
AIPVVGEGLHAAHQAILQQGGPVGFQPYRRPLNFPLRIFLLIVFMCITLLIASLICLTLPVFAGRWLMSF
WTGTAKIHELYTAACGLYVCWLTIRAVTVMVAWMPQGRRVIFQKVKEWSLMIMKTLIVAVLLAGVVPLLL
GLLFELVIVAPLRVPLDQTPLFYPWQDWALGVLHAKIIAAITLMGPQWWLKTVIEQVYANGIRNIDLHYI
VRKLAAPVISVLLLSLCVPYVIASGVVPLLGVTAEMQNLVHRRIYPFLLMVVVLMAILSFQVRQFKRLYE
HIKNDKYLVGQRLVNYERKSGKQGSSPPPPQSSQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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