NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13879.1 Public Homo sapiens 22 GAL3ST1 24 110 108 CCDS HistoryNCBI Gene:9514Re-query CCDS DB by CCDS ID:13879.1Re-query CCDS DB by GeneID:9514See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13879.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338911.6 ENSP00000343234.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000338911.6Link to Ensembl Protein Viewer:ENSP00000343234.5Re-query CCDS DB by Nucleotide ID:ENST00000338911Re-query CCDS DB by Protein ID:ENSP00000343234
Original member Current member EBI ENST00000402369.5 ENSP00000384122.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402369.5Link to Ensembl Protein Viewer:ENSP00000384122.1Re-query CCDS DB by Nucleotide ID:ENST00000402369Re-query CCDS DB by Protein ID:ENSP00000384122
Original member Current member EBI ENST00000401975.5 ENSP00000384388.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000401975.5Link to Ensembl Protein Viewer:ENSP00000384388.1Re-query CCDS DB by Nucleotide ID:ENST00000401975Re-query CCDS DB by Protein ID:ENSP00000384388
Original member Current member EBI ENST00000406361.6 ENSP00000385207.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000406361.6Link to Ensembl Protein Viewer:ENSP00000385207.1Re-query CCDS DB by Nucleotide ID:ENST00000406361Re-query CCDS DB by Protein ID:ENSP00000385207
Original member Current member EBI ENST00000402321.5 ENSP00000385735.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402321.5Link to Ensembl Protein Viewer:ENSP00000385735.1Re-query CCDS DB by Nucleotide ID:ENST00000402321Re-query CCDS DB by Protein ID:ENSP00000385735
Original member Current member EBI ENST00000406955.5 ENSP00000385825.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406955.5Link to Ensembl Protein Viewer:ENSP00000385825.1Re-query CCDS DB by Nucleotide ID:ENST00000406955Re-query CCDS DB by Protein ID:ENSP00000385825
Original member Current member NCBI NM_001318103.2 NP_001305032.1 Accepted alive Link to Nucleotide Sequence:NM_001318103.2Link to Protein Sequence:NP_001305032.1Re-query CCDS DB by Nucleotide ID:NM_001318103Re-query CCDS DB by Protein ID:NP_001305032Link to BLAST:NP_001305032.1
Original member Current member NCBI NM_001318104.2 NP_001305033.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001318104.2Link to Protein Sequence:NP_001305033.1Re-query CCDS DB by Nucleotide ID:NM_001318104Re-query CCDS DB by Protein ID:NP_001305033Link to BLAST:NP_001305033.1
Original member Current member NCBI NM_001318105.2 NP_001305034.1 Accepted alive Link to Nucleotide Sequence:NM_001318105.2Link to Protein Sequence:NP_001305034.1Re-query CCDS DB by Nucleotide ID:NM_001318105Re-query CCDS DB by Protein ID:NP_001305034Link to BLAST:NP_001305034.1
Original member Current member NCBI NM_001318106.2 NP_001305035.1 Accepted alive Link to Nucleotide Sequence:NM_001318106.2Link to Protein Sequence:NP_001305035.1Re-query CCDS DB by Nucleotide ID:NM_001318106Re-query CCDS DB by Protein ID:NP_001305035Link to BLAST:NP_001305035.1
Original member Current member NCBI NM_001318108.2 NP_001305037.1 Accepted alive Link to Nucleotide Sequence:NM_001318108.2Link to Protein Sequence:NP_001305037.1Re-query CCDS DB by Nucleotide ID:NM_001318108Re-query CCDS DB by Protein ID:NP_001305037Link to BLAST:NP_001305037.1
Original member Current member NCBI NM_001318110.2 NP_001305039.1 Accepted alive Link to Nucleotide Sequence:NM_001318110.2Link to Protein Sequence:NP_001305039.1Re-query CCDS DB by Nucleotide ID:NM_001318110Re-query CCDS DB by Protein ID:NP_001305039Link to BLAST:NP_001305039.1
Original member Current member NCBI NM_001318111.2 NP_001305040.1 Accepted alive Link to Nucleotide Sequence:NM_001318111.2Link to Protein Sequence:NP_001305040.1Re-query CCDS DB by Nucleotide ID:NM_001318111Re-query CCDS DB by Protein ID:NP_001305040Link to BLAST:NP_001305040.1
Original member Current member NCBI NM_001318112.2 NP_001305041.1 Accepted alive Link to Nucleotide Sequence:NM_001318112.2Link to Protein Sequence:NP_001305041.1Re-query CCDS DB by Nucleotide ID:NM_001318112Re-query CCDS DB by Protein ID:NP_001305041Link to BLAST:NP_001305041.1
Original member Current member NCBI NM_001318113.2 NP_001305042.1 Accepted alive Link to Nucleotide Sequence:NM_001318113.2Link to Protein Sequence:NP_001305042.1Re-query CCDS DB by Nucleotide ID:NM_001318113Re-query CCDS DB by Protein ID:NP_001305042Link to BLAST:NP_001305042.1
Original member Current member NCBI NM_001318115.2 NP_001305044.1 Accepted alive Link to Nucleotide Sequence:NM_001318115.2Link to Protein Sequence:NP_001305044.1Re-query CCDS DB by Nucleotide ID:NM_001318115Re-query CCDS DB by Protein ID:NP_001305044Link to BLAST:NP_001305044.1
Original member Current member NCBI NM_001318116.2 NP_001305045.1 Accepted alive Link to Nucleotide Sequence:NM_001318116.2Link to Protein Sequence:NP_001305045.1Re-query CCDS DB by Nucleotide ID:NM_001318116Re-query CCDS DB by Protein ID:NP_001305045Link to BLAST:NP_001305045.1
Original member Current member NCBI NM_004861.3 NP_004852.1 Accepted alive Link to Nucleotide Sequence:NM_004861.3Link to Protein Sequence:NP_004852.1Re-query CCDS DB by Nucleotide ID:NM_004861Re-query CCDS DB by Protein ID:NP_004852Link to BLAST:NP_004852.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305032.1 423 Q99999 423 100% 0 0
NP_001305033.1 423 Q99999 423 100% 0 0
NP_001305034.1 423 Q99999 423 100% 0 0
NP_001305035.1 423 Q99999 423 100% 0 0
NP_001305037.1 423 Q99999 423 100% 0 0
NP_001305039.1 423 Q99999 423 100% 0 0
NP_001305040.1 423 Q99999 423 100% 0 0
NP_001305041.1 423 Q99999 423 100% 0 0
NP_001305042.1 423 Q99999 423 100% 0 0
NP_001305044.1 423 Q99999 423 100% 0 0
NP_001305045.1 423 Q99999 423 100% 0 0
NP_004852.1 423 Q99999 423 100% 0 0

Chromosomal Locations for CCDS 13879.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 30554953 30556093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30557262 30557392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGCTGCCACCGCAGAAGAAGCCCTGGGAGTCCATGGCTAAGGGGCTGGTGCTGGGCGCGCTCTTCACTA
GTTTCCTGCTGCTGGTGTACTCCTATGCCGTGCCCCCGCTGCATGCCGGCCTGGCCTCCACGACCCCGGA
GGCCGCAGCGTCCTGCTCTCCACCTGCACTCGAGCCAGAGGCAGTGATCCGGGCCAACGGCTCGGCGGGG
GAGTGCCAGCCGCGGCGCAACATCGTGTTCTTGAAGACGCACAAGACGGCCAGCAGCACCCTGCTCAACA
TCCTGTTCCGCTTCGGCCAGAAGCACCGGCTCAAGTTCGCCTTCCCTAACGGCCGCAATGACTTCGACTA
CCCGACCTTCTTCGCCCGCAGCCTGGTGCAGGACTATCGGCCCGGGGCCTGCTTCAACATCATCTGCAAC
CACATGCGCTTCCACTACGACGAGGTGCGCGGCCTGGTGCCGACCAACGCCATCTTCATCACGGTGCTCC
GCGACCCCGCCCGCTTGTTCGAGTCCTCCTTCCACTACTTCGGGCCGGTGGTGCCCCTCACGTGGAAGCT
CTCGGCCGGCGACAAGCTGACCGAGTTCCTGCAAGACCCGGATCGCTACTACGACCCCAACGGCTTCAAT
GCCCACTACCTCCGAAACCTGCTCTTCTTCGACCTGGGCTATGACAACAGCCTGGACCCCAGCAGCCCGC
AGGTGCAGGAGCACATCCTGGAGGTGGAGCGTCGCTTCCACCTGGTGCTCCTTCAAGAGTACTTCGACGA
GTCGCTGGTGCTGCTGAAGGACCTGCTGTGCTGGGAGCTGGAGGACGTGCTCTACTTCAAGCTCAACGCC
CGCCGCGACTCGCCCGTGCCGCGGCTCTCGGGGGAGCTGTATGGGCGCGCCACCGCCTGGAACATGCTGG
ACTCCCACCTCTACCGCCACTTCAACGCCAGCTTCTGGCGCAAGGTGGAGGCCTTCGGGCGGGAGCGCAT
GGCCCGCGAGGTGGCCGCCCTGCGCCATGCCAACGAGCGCATGCGGACCATCTGCATCGACGGGGGCCAC
GCCGTGGACGCCGCCGCCATCCAGGACGAGGCCATGCAGCCCTGGCAGCCGCTGGGCACCAAGTCCATCC
TGGGCTACAACCTCAAGAAGAGCATCGGGCAGCGGCACGCGCAGCTCTGCCGGCGCATGCTCACGCCCGA
GATCCAGTACCTGATGGACCTCGGCGCCAACCTGTGGGTCACCAAGCTCTGGAAGTTCATTCGCGATTTC
CTGCGGTGGTGA

Translation (423 aa):
MLPPQKKPWESMAKGLVLGALFTSFLLLVYSYAVPPLHAGLASTTPEAAASCSPPALEPEAVIRANGSAG
ECQPRRNIVFLKTHKTASSTLLNILFRFGQKHRLKFAFPNGRNDFDYPTFFARSLVQDYRPGACFNIICN
HMRFHYDEVRGLVPTNAIFITVLRDPARLFESSFHYFGPVVPLTWKLSAGDKLTEFLQDPDRYYDPNGFN
AHYLRNLLFFDLGYDNSLDPSSPQVQEHILEVERRFHLVLLQEYFDESLVLLKDLLCWELEDVLYFKLNA
RRDSPVPRLSGELYGRATAWNMLDSHLYRHFNASFWRKVEAFGRERMAREVAALRHANERMRTICIDGGH
AVDAAAIQDEAMQPWQPLGTKSILGYNLKKSIGQRHAQLCRRMLTPEIQYLMDLGANLWVTKLWKFIRDF
LRW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH