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Report for CCDS34310.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34310.1 Public Homo sapiens 5 HNRNPAB 24 110 108 CCDS HistoryNCBI Gene:3182Re-query CCDS DB by CCDS ID:34310.1Re-query CCDS DB by GeneID:3182See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34310.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355836.9 ENSP00000348093.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355836.9Link to Ensembl Protein Viewer:ENSP00000348093.5Re-query CCDS DB by Nucleotide ID:ENST00000355836Re-query CCDS DB by Protein ID:ENSP00000348093
Original member Current member EBI ENST00000506259.5 ENSP00000427465.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506259.5Link to Ensembl Protein Viewer:ENSP00000427465.1Re-query CCDS DB by Nucleotide ID:ENST00000506259Re-query CCDS DB by Protein ID:ENSP00000427465
Original member Current member NCBI NM_004499.4 NP_004490.2 Accepted alive Link to Nucleotide Sequence:NM_004499.4Link to Protein Sequence:NP_004490.2Re-query CCDS DB by Nucleotide ID:NM_004499Re-query CCDS DB by Protein ID:NP_004490Link to BLAST:NP_004490.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004490.2 285 Q99729-3 285 100% 0 0

Chromosomal Locations for CCDS 34310.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 178204838 178205046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178205842 178206010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178206732 178206890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178207094 178207225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178209330 178209447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178210553 178210623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGTCGGAAGCGGGCGAGGAGCAGCCCATGGAGACGACGGGCGCCACCGAGAACGGACATGAGGCCGTCC
CCGAAGGCGAGTCGCCGGCCGGGGCTGGCACGGGCGCCGCGGCGGGGGCTGGAGGCGCGACCGCGGCGCC
CCCGAGCGGGAATCAGAACGGCGCCGAGGGCGACCAGATCAACGCCAGCAAGAACGAGGAGGACGCGGGA
AAAATGTTCGTTGGTGGCCTGAGCTGGGATACTAGCAAAAAAGATTTAAAAGACTATTTTACTAAATTTG
GAGAGGTCGTTGACTGTACAATAAAAATGGATCCCAACACTGGACGGTCAAGAGGGTTTGGGTTTATCCT
GTTCAAAGATGCAGCCAGTGTGGAGAAGGTCCTAGACCAGAAGGAGCACAGGCTGGATGGCCGTGTCATT
GACCCTAAAAAGGCCATGGCTATGAAGAAGGACCCGGTGAAGAAAATCTTCGTTGGGGGTCTGAATCCTG
AAGCCACTGAGGAAAAGATCAGGGAGTACTTTGGCGAGTTTGGGGAGATTGAGGCCATTGAATTGCCAAT
GGATCCAAAGTTGAACAAAAGACGAGGTTTTGTGTTTATCACCTTTAAAGAAGAAGAACCCGTGAAGAAG
GTTCTGGAGAAAAAGTTCCATACTGTCAGTGGAAGCAAGTGTGAGATCAAGGTGGCCCAGCCCAAAGAAG
TCTATCAGCAGCAGCAGTATGGCTCTGGGGGCCGTGGAAACCGCAACCGAGGGAACCGAGGCAGCGGAGG
TGGTGGTGGAGGTGGAGGTCAGGGTAGTACAAACTACGGCAAGAGCCAGCGACGTGGTGGCCATCAGAAT
AACTACAAGCCATACTGA

Translation (285 aa):
MSEAGEEQPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAG
KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVI
DPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKK
VLEKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQN
NYKPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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