NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55547.1 Public Homo sapiens X TMLHE 24 110 108 CCDS HistoryNCBI Gene:55217Re-query CCDS DB by CCDS ID:55547.1Re-query CCDS DB by GeneID:55217See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55547.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369439.4 ENSP00000358447.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369439.4Link to Ensembl Protein Viewer:ENSP00000358447.4Re-query CCDS DB by Nucleotide ID:ENST00000369439Re-query CCDS DB by Protein ID:ENSP00000358447
Original member Current member NCBI NM_001184797.2 NP_001171726.1 Accepted alive Link to Nucleotide Sequence:NM_001184797.2Link to Protein Sequence:NP_001171726.1Re-query CCDS DB by Nucleotide ID:NM_001184797Re-query CCDS DB by Protein ID:NP_001171726Link to BLAST:NP_001171726.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171726.1 376 Q9NVH6-2 376 100% 0 0

Chromosomal Locations for CCDS 55547.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 155492565 155492700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155506898 155507134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155511673 155511792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155513986 155514265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155524456 155524632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 155545096 155545276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGTGGTACCACAGATTGTCCCACCTACACAGCAGGCTTCAGGACTTGCTGAAGGGAGGAGTCATATATC
CGGCCCTTCCACAGCCCAACTTCAAAAGCTTACTTCCTTTAGCTGTCCATTGGCACCATACAGCCTCCAA
GTCTCTGACTTGTGCTTGGCAGCAACATGAAGATCATTTTGAGCTGAAATATGCTAATACCGTGATGCGC
TTTGATTACGTCTGGCTTCGAGACCACTGCCGCTCAGCATCGTGCTACAACTCTAAGACTCACCAGCGCA
GCCTGGATACTGCCAGTGTGGATTTATGTATCAAGCCAAAGACCATTCGTCTGGATGAGACCACACTCTT
TTTCACTTGGCCAGATGGTCATGTGACTAAATATGATTTGAATTGGCTGGTGAAAAACAGCTATGAAGGG
CAGAAACAAAAAGTCATCCAGCCTAGAATACTATGGAATGCTGAAATCTACCAGCAAGCCCAAGTTCCAT
CGGTAGATTGCCAGAGCTTCTTAGAAACCAACGAGGGACTGAAGAAGTTTCTGCAAAACTTTCTGCTCTA
TGGAATTGCATTCGTAGAAAATGTCCCTCCCACTCAAGAGCACACAGAGAAGTTGGCAGAAAGGATCAGC
TTAATCAGAGAAACCATTTATGGGAGGATGTGGTATTTCACTTCAGACTTCTCCAGAGGTGACACTGCGT
ACACCAAGCTAGCTCTGGATCGGCACACTGACACTACCTATTTTCAAGAGCCCTGTGGCATTCAAGTGTT
TCATTGTCTTAAACATGAAGGAACTGGTGGCAGGACACTGCTAGTAGATGGATTCTATGCAGCAGAACAG
GTACTTCAAAAGGCACCTGAGGAATTTGAACTCCTCAGTAAAGTGCCATTGAAGCATGAATATATTGAAG
ATGTTGGAGAATGTCACAACCACATGATTGGGATTGGGCCAGTCTTAAATATCTACCCATGGAATAAAGA
GCTGTATTTGATCAGATTATTCAAAGAAAAACAAAACACGGTCAACAGGCAGTGGAACTCCTCACTCCAA
TGTGATATTCCTGAGAGAATATTGACTTATCGTCACTTCGTCTCTGGGACAAGTATTGAACATAGGGGAA
GCCTTATATAA

Translation (376 aa):
MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHFELKYANTVMR
FDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEG
QKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHTEKLAERIS
LIRETIYGRMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQ
VLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQNTVNRQWNSSLQ
CDIPERILTYRHFVSGTSIEHRGSLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH