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Report for CCDS75261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75261.1 Public Homo sapiens 5 SV2C 24 110 108 CCDS HistoryNCBI Gene:22987Re-query CCDS DB by CCDS ID:75261.1Re-query CCDS DB by GeneID:22987See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75261.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322285.7 ENSP00000316983.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000322285.7Link to Ensembl Protein Viewer:ENSP00000316983.7Re-query CCDS DB by Nucleotide ID:ENST00000322285Re-query CCDS DB by Protein ID:ENSP00000316983
Original member Current member NCBI NM_001297716.2 NP_001284645.1 Accepted alive Link to Nucleotide Sequence:NM_001297716.2Link to Protein Sequence:NP_001284645.1Re-query CCDS DB by Nucleotide ID:NM_001297716Re-query CCDS DB by Protein ID:NP_001284645Link to BLAST:NP_001284645.1

Chromosomal Locations for CCDS 75261.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 76131751 76132330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76194919 76195099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76209736 76209887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76285162 76285295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76285781 76285870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76291221 76291331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76291768 76291856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76295778 76295942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76298794 76298927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76300729 76300932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76301386 76301545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76353130 76353160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2031 nt):
ATGGAAGACTCTTACAAGGATAGGACTTCACTGATGAAGGGTGCCAAGGACATTGCCAGAGAGGTGAAGA
AA
CAAACAGTAAAGAAGGTGAATCAAGCTGTGGACCGAGCCCAGGATGAATACACCCAGAGGTCCTACAG
T
CGGTTCCAAGATGAAGAAGATGATGATGACTACTACCCGGCTGGAGAAACCTATAATGGTGAGGCCAAC
GAT
GACGAAGGCTCAAGTGAAGCCACTGAGGGGCATGATGAAGATGATGAGATCTATGAGGGGGAGTATC
AG
GGCATCCCCAGTATGAACCAAGCGAAGGACAGCATCGTGTCAGTGGGGCAGCCCAAGGGCGATGAGTA
C
AAGGACCGGCGGGAGCTGGAATCAGAAAGGAGAGCTGACGAGGAAGAGTTAGCCCAGCAGTATGAGCTG
ATA
ATCCAAGAATGCGGTCATGGTCGTTTTCAGTGGGCCCTTTTCTTCGTCCTGGGCATGGCTCTTATGG
CA
GACGGTGTAGAGGTGTTTGTCGTTGGCTTCGTGTTACCCAGTGCTGAGACAGACCTCTGCATCCCAAA
T
TCAGGATCTGGATGGCTAGGCAGCATAGTGTACCTCGGGATGATGGTGGGGGCGTTCTTCTGGGGAGGA
CTG
GCAGACAAAGTGGGAAGGAAACAGTCTCTTCTGATTTGCATGTCTGTCAACGGATTCTTTGCCTTCC
TT
TCTTCATTTGTCCAAGGTTATGGCTTCTTTCTCTTCTGTCGCTTACTTTCTGGATTCGGGATTGGAGG
A
GCCATACCCACTGTGTTCTCGTACTTTGCTGAAGTCCTGGCCCGGGAAAAGCGGGGCGAACACTTGAGC
TGG
CTCTGCATGTTCTGGATGATCGGTGGCATCTACGCCTCTGCCATGGCCTGGGCCATCATCCCGCACT
AC
GGGTGGAGCTTCAGCATGGGATCGGCCTACCAGTTTCACAGTTGGCGTGTGTTTGTCATCGTCTGTGC
A
CTCCCCTGTGTCTCCTCCGTGGTGGCCCTCACATTCATGCCTGAAAGCCCACGATTCTTGTTGGAGGTT
GGA
AAACATGATGAAGCTTGGATGATTCTGAAGTTAATTCATGACACCAACATGAGAGCCCGGGGTCAGC
CT
GAGAAGGTCTTCACGGTAAACAAAATAAAAACTCCTAAACAAATAGATGAGCTGATTGAAATTGAGAG
T
GACACAGGAACATGGTATAGGAGGTGTTTTGTTCGGATCCGCACCGAGCTGTACGGAATTTGGTTGACT
TTT
ATGAGATGTTTCAACTACCCAGTCAGGGATAATACAATAAAGCTTACAATTGTTTGGTTCACCCTGT
CC
TTTGGGTACTATGGATTATCCGTTTGGTTCCCTGATGTCATTAAACCTCTGCAGTCCGATGAATATGC
A
TTGCTAACCAGAAATGTGGAGAGAGATAAATATGCAAATTTCACTATTAACTTTACAATGGAAAATCAG
ATT
CATACTGGAATGGAATACGACAATGGCAGATTCATAGGGGTCAAGTTCAAATCTGTAACTTTCAAAG
AC
TCTGTTTTTAAGTCCTGCACCTTTGAGGATGTAACTTCAGTGAACACCTACTTCAAGAACTGCACATT
T
ATTGACACTGTTTTTGACAACACAGATTTTGAGCCATATAAATTCATTGACAGTGAATTTAAAAACTGC
TCG
TTTTTTCACAACAAGACGGGATGTCAGATTACCTTTGATGATGACTATAGTGCCTACTGGATTTATT
TT
GTCAACTTTCTGGGGACATTGGCAGTATTGCCAGGGAACATTGTGTCTGCTCTGCTGATGGACAGAAT
T
GGGCGCTTAACAATGCTAGGTGGCTCTATGGTGCTTTCGGGGATCAGCTGTTTCTTCCTTTGGTTCGGC
ACC
AGTGAATCCATGATGATAGGCATGCTGTGTCTGTACAATGGATTGACCATCTCAGCCTGGAACTCTC
TT
GACGTGGTCACTGTGGAACTGTACCCCACAGACCGGAGACGCAGAGTCTTGCCATGTTGCCCCGGCTG
A


Translation (676 aa):
MEDSYKDRTSLMKGAKDIAREVKKQTVKKVNQAVDRAQDEYTQRSYSRFQDEEDDDDYYPAGETYNGEAN
D
DEGSSEATEGHDEDDEIYEGEYQGIPSMNQAKDSIVSVGQPKGDEYKDRRELESERRADEEELAQQYEL
I
IQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSGWL
GSIVYLGMMVGAFFWGG
L
ADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLFCRLLSGF
GIGGAIPTVFSYFAEVLAREKRGEHLS
W
LCMFWMIGGIYASAMAWAIIPHY
GWSFSMGSAYQFHSWRVFVIVCALPCVSSVVALTFMPESPRFLLEV
G
KHDEAWMILKLIHDTNMRARGQPEKVFT
VNKIKTPKQIDELIEIESDTGTWYRRCFVRIRTELYGIWLT
F
MRCFNYPVRDNTIKLTIVWFTLSF
GYYGLSVWFPDVIKPLQSDEYALLTRNVERDKYANFTINFTMENQ
I
HTGMEYDNG
RFIGVKFKSVTFKDSVFKSCTFEDVTSVNTYFKNCTFIDTVFDNTDFEPYKFIDSEFKNC
S
FFHNKTGCQITFDDDYSAYWIYFVNFLGTLAVLPGNIVSALLMDRIGRLTML
GGSMVLSGISCFFLWFG
T
SESMMIGMLCLYNGLTISAWNSLDVVTVELYPTDR
RRRVLPCCPG



Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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