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Report for CCDS43453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43453.1 Public Homo sapiens 6 SLC39A7 24 110 108 CCDS HistoryNCBI Gene:7922Re-query CCDS DB by CCDS ID:43453.1Re-query CCDS DB by GeneID:7922See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43453.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374675.7 ENSP00000363807.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374675.7Link to Ensembl Protein Viewer:ENSP00000363807.3Re-query CCDS DB by Nucleotide ID:ENST00000374675Re-query CCDS DB by Protein ID:ENSP00000363807
Original member Current member EBI ENST00000374677.8 ENSP00000363809.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374677.8Link to Ensembl Protein Viewer:ENSP00000363809.3Re-query CCDS DB by Nucleotide ID:ENST00000374677Re-query CCDS DB by Protein ID:ENSP00000363809
Original member Current member NCBI NM_001077516.2 NP_001070984.1 Accepted alive Link to Nucleotide Sequence:NM_001077516.2Link to Protein Sequence:NP_001070984.1Re-query CCDS DB by Nucleotide ID:NM_001077516Re-query CCDS DB by Protein ID:NP_001070984Link to BLAST:NP_001070984.1
Original member Current member NCBI NM_006979.3 NP_008910.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006979.3Link to Protein Sequence:NP_008910.2Re-query CCDS DB by Nucleotide ID:NM_006979Re-query CCDS DB by Protein ID:NP_008910Link to BLAST:NP_008910.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070984.1 469 Q92504 469 100% 0 0
NP_008910.2 469 Q92504 469 100% 0 0

Chromosomal Locations for CCDS 43453.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 33201246 33201656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33201745 33201913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33202072 33202125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33202263 33202427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33202560 33202700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33202910 33203106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33203541 33203813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGGCCAGAGGCCTGGGGGCCCCCCACTGGGTGGCCGTGGGACTGCTGACCTGGGCGACCTTGGGGCTTC
TGGTGGCTGGACTCGGGGGTCATGACGACCTGCACGACGATCTGCAAGAGGACTTCCATGGCCACAGCCA
CAGGCACTCACATGAAGATTTCCACCATGGCCACAGCCATGCCCATGGCCATGGCCACACTCACGAGAGC
ATCTGGCATGGACATACCCACGATCACGACCATGGACATTCACATGAGGATTTACACCATGGCCATAGCC
ATGGCTACTCCCATGAGAGCCTCTACCACAGAGGACATGGACATGACCATGAGCATAGCCATGGAGGCTA
TGGGGAGTCTGGGGCTCCAGGCATCAAGCAGGACCTGGATGCTGTCACTCTCTGGGCTTATGCACTGGGG
GCCACAGTGCTGATCTCAGCAGCTCCATTTTTTGTCCTCTTCCTTATCCCCGTGGAGTCGAACTCTCCCC
GGCATCGCTCTCTACTTCAGATCTTGCTCAGTTTTGCTTCCGGTGGGCTCCTGGGAGATGCTTTCCTGCA
CCTCATTCCTCATGCTCTTGAACCTCATTCTCACCACACTCTGGAGCAACCCGGACATGGACACTCCCAC
AGTGGCCAGGGCCCCATTCTGTCTGTGGGACTGTGGGTTCTCAGTGGAATTGTTGCCTTTCTTGTCGTGG
AGAAATTTGTGAGACATGTGAAAGGAGGACATGGTCACAGTCATGGACATGGACACGCTCACAGTCATAC
ACGTGGAAGTCATGGACATGGAAGACAAGAGCGTTCTACCAAGGAGAAGCAGAGCTCAGAGGAAGAAGAA
AAGGAAACAAGAGGGGTTCAGAAGAGGCGAGGAGGGAGCACAGTACCCAAAGATGGGCCAGTGAGACCTC
AGAACGCTGAAGAAGAAAAAAGAGGCTTAGACCTGCGTGTGTCGGGGTACCTGAATCTGGCTGCTGACTT
GGCACACAACTTCACTGATGGTCTGGCCATTGGGGCTTCCTTTCGAGGGGGCCGGGGACTAGGGATCCTG
ACCACAATGACTGTCCTGCTACATGAAGTGCCCCACGAGGTCGGAGACTTTGCCATCTTGGTCCAGTCTG
GCTGCAGCAAAAAGCAGGCGATGCGTCTGCAACTACTGACAGCAGTAGGGGCACTGGCAGGCACAGCCTG
TGCCCTTCTCACTGAAGGAGGAGCAGTGGGCAGTGAAATTGCAGGTGGTGCAGGTCCTGGCTGGGTCCTG
CCATTTACTGCAGGTGGCTTTATCTACGTAGCAACAGTGTCTGTGTTGCCCGAGCTGCTGAGGGAGGCAT
CACCATTGCAATCACTTCTGGAGGTGCTGGGGCTGCTGGGGGGAGTTATCATGATGGTGCTGATTGCCCA
CCTTGAGTGA

Translation (469 aa):
MARGLGAPHWVAVGLLTWATLGLLVAGLGGHDDLHDDLQEDFHGHSHRHSHEDFHHGHSHAHGHGHTHES
IWHGHTHDHDHGHSHEDLHHGHSHGYSHESLYHRGHGHDHEHSHGGYGESGAPGIKQDLDAVTLWAYALG
ATVLISAAPFFVLFLIPVESNSPRHRSLLQILLSFASGGLLGDAFLHLIPHALEPHSHHTLEQPGHGHSH
SGQGPILSVGLWVLSGIVAFLVVEKFVRHVKGGHGHSHGHGHAHSHTRGSHGHGRQERSTKEKQSSEEEE
KETRGVQKRRGGSTVPKDGPVRPQNAEEEKRGLDLRVSGYLNLAADLAHNFTDGLAIGASFRGGRGLGIL
TTMTVLLHEVPHEVGDFAILVQSGCSKKQAMRLQLLTAVGALAGTACALLTEGGAVGSEIAGGAGPGWVL
PFTAGGFIYVATVSVLPELLREASPLQSLLEVLGLLGGVIMMVLIAHLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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