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Report for CCDS83002.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83002.1 Public Homo sapiens 5 CDK7 24 110 108 CCDS HistoryNCBI Gene:1022Re-query CCDS DB by CCDS ID:83002.1Re-query CCDS DB by GeneID:1022See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83002.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000502604.5 ENSP00000422121.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000502604.5Link to Ensembl Protein Viewer:ENSP00000422121.1Re-query CCDS DB by Nucleotide ID:ENST00000502604Re-query CCDS DB by Protein ID:ENSP00000422121
Original member Current member NCBI NM_001324072.1 NP_001311001.1 Accepted alive Link to Nucleotide Sequence:NM_001324072.1Link to Protein Sequence:NP_001311001.1Re-query CCDS DB by Nucleotide ID:NM_001324072Re-query CCDS DB by Protein ID:NP_001311001Link to BLAST:NP_001311001.1
Original member Current member NCBI NM_001324074.2 NP_001311003.1 Accepted alive Link to Nucleotide Sequence:NM_001324074.2Link to Protein Sequence:NP_001311003.1Re-query CCDS DB by Nucleotide ID:NM_001324074Re-query CCDS DB by Protein ID:NP_001311003Link to BLAST:NP_001311003.1
Original member Current member NCBI NM_001324075.2 NP_001311004.1 Accepted alive Link to Nucleotide Sequence:NM_001324075.2Link to Protein Sequence:NP_001311004.1Re-query CCDS DB by Nucleotide ID:NM_001324075Re-query CCDS DB by Protein ID:NP_001311004Link to BLAST:NP_001311004.1
Original member Current member NCBI NM_001324077.1 NP_001311006.1 Accepted alive Link to Nucleotide Sequence:NM_001324077.1Link to Protein Sequence:NP_001311006.1Re-query CCDS DB by Nucleotide ID:NM_001324077Re-query CCDS DB by Protein ID:NP_001311006Link to BLAST:NP_001311006.1
Original member Current member NCBI NM_001324078.2 NP_001311007.1 Accepted alive Link to Nucleotide Sequence:NM_001324078.2Link to Protein Sequence:NP_001311007.1Re-query CCDS DB by Nucleotide ID:NM_001324078Re-query CCDS DB by Protein ID:NP_001311007Link to BLAST:NP_001311007.1

Chromosomal Locations for CCDS 83002.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 69255511 69255528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69258043 69258153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69259818 69259936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69262205 69262304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69269207 69269293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69272892 69273041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69276543 69276690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69277107 69277135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGGAAACTGATCTAGAGGTTATAATAAAGGATAATAGTCTTGTGCTGACACCATCACACATCAAAGCCT
ACATGTTGATGACTCTTCAAGGATTAGAATATTTACATCAACATTGGATCCTACATAGGGATCTGAAACC
AAACAACTTGTTGCTAGATGAAAATGGAGTTCTAAAACTGGCAGATTTTGGCCTGGCCAAATCTTTTGGG
AGCCCCAATAGAGCTTATACACATCAGGTTGTAACCAGGTGGTATCGGGCCCCCGAGTTACTATTTGGAG
CTAGGATGTATGGTGTAGGTGTGGACATGTGGGCTGTTGGCTGTATATTAGCAGAGTTACTTCTAAGGGT
TCCTTTTTTGCCAGGAGATTCAGACCTTGATCAGCTAACAAGAATATTTGAAACTTTGGGCACACCAACT
GAGGAACAGTGGCCGGACATGTGTAGTCTTCCAGATTATGTGACATTTAAGAGTTTCCCTGGAATACCTT
TGCATCACATCTTCAGTGCAGCAGGAGACGACTTACTAGATCTCATACAAGGCTTATTCTTATTTAATCC
ATGTGCTCGAATTACGGCCACACAGGCACTGAAAATGAAGTATTTCAGTAATCGGCCAGGGCCAACACCT
GGATGTCAGCTGCCAAGACCAAACTGTCCAGTGGAAACCTTAAAGGAGCAATCAAATCCAGCTTTGGCAA
TAAAAAGGAAAAGAACAGAGGCCTTAGAACAAGGAGGATTGCCCAAGAAACTAATTTTTTAA

Translation (253 aa):
METDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFG
SPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPT
EEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNRPGPTP
GCQLPRPNCPVETLKEQSNPALAIKRKRTEALEQGGLPKKLIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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