NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47803.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47803.1 Public Homo sapiens 8 NEIL2 24 110 108 CCDS HistoryNCBI Gene:252969Re-query CCDS DB by CCDS ID:47803.1Re-query CCDS DB by GeneID:252969See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47803.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000403422.7 ENSP00000384070.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403422.7Link to Ensembl Protein Viewer:ENSP00000384070.3Re-query CCDS DB by Nucleotide ID:ENST00000403422Re-query CCDS DB by Protein ID:ENSP00000384070
Original member Current member NCBI NM_001135747.3 NP_001129219.1 Accepted alive Link to Nucleotide Sequence:NM_001135747.3Link to Protein Sequence:NP_001129219.1Re-query CCDS DB by Nucleotide ID:NM_001135747Re-query CCDS DB by Protein ID:NP_001129219Link to BLAST:NP_001129219.1
Original member Current member NCBI NM_001349439.2 NP_001336368.1 Accepted alive Link to Nucleotide Sequence:NM_001349439.2Link to Protein Sequence:NP_001336368.1Re-query CCDS DB by Nucleotide ID:NM_001349439Re-query CCDS DB by Protein ID:NP_001336368Link to BLAST:NP_001336368.1
Original member Current member NCBI NM_001349440.2 NP_001336369.1 Accepted alive Link to Nucleotide Sequence:NM_001349440.2Link to Protein Sequence:NP_001336369.1Re-query CCDS DB by Nucleotide ID:NM_001349440Re-query CCDS DB by Protein ID:NP_001336369Link to BLAST:NP_001336369.1
Original member Current member NCBI NM_001349441.2 NP_001336370.1 Accepted alive Link to Nucleotide Sequence:NM_001349441.2Link to Protein Sequence:NP_001336370.1Re-query CCDS DB by Nucleotide ID:NM_001349441Re-query CCDS DB by Protein ID:NP_001336370Link to BLAST:NP_001336370.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129219.1 271 Q969S2-3 271 100% 0 0
NP_001336368.1 271 Q969S2-3 271 100% 0 0
NP_001336369.1 271 Q969S2-3 271 100% 0 0
NP_001336370.1 271 Q969S2-3 271 100% 0 0

Chromosomal Locations for CCDS 47803.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 11779643 11779950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11783203 11783399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11785963 11786273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGGGGCCCCCTGGCAGCAGCCCAACACCAGAGCCTCCACAAAAAGAAGTGCAGAAGGAAGGGGCTGCGG
ACCCAAAGCAGGTCGGGGAGCCCAGCGGGCAGAAGACCCTTGATGGATCCTCACGGTCTGCAGAGCTCGT
CCCCCAGGGCGAGGATGATTCTGAGTATTTGGAGAGAGACGCCCCTGCAGGAGATGCTGGGAGGTGGCTG
CGTGTCAGCTTTGGTTTGTTTGGCAGCGTTTGGGTGAACGATTTCTCCAGAGCCAAGAAAGCCAACAAGA
GGGGGGACTGGAGGGACCCTTCCCCGAGGTTGGTCCTGCACTTTGGTGGTGGTGGCTTCCTGGCATTTTA
TAATTGTCAGTTGTCTTGGAGCTCTTCCCCAGTGGTCACACCCACCTGTGACATCCTGTCTGAGAAGTTC
CATCGAGGACAAGCCTTAGAAGCTCTAGGCCAGGCTCAGCCTGTCTGCTATACACTGCTGGACCAGAGAT
ACTTCTCAGGGCTAGGGAACATCATTAAGAATGAAGCCTTGTACAGAGCTGGGATCCATCCCCTTTCTCT
CGGTTCAGTCCTGAGTGCCTCGCGTCGGGAGGTCCTGGTGGATCACGTGGTGGAGTTCAGTACAGCCTGG
CTGCAGGGCAAGTTCCAAGGCAGACCGCAGCACACACAGGTCTACCAGAAAGAACAGTGCCCTGCTGGCC
ACCAGGTCATGAAGGAGGCGTTTGGGCCCGAAGATGGGTTACAGAGGCTCACCTGGTGGTGCCCGCAGTG
CCAGCCCCAGTTGTCAGAGGAGCCAGAGCAGTGCCAGTTCTCCTAA

Translation (271 aa):
MGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERDAPAGDAGRWL
RVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKF
HRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAW
LQGKFQGRPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH