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Report for CCDS45420.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45420.1 Public Homo sapiens 16 PARN 24 110 108 CCDS HistoryNCBI Gene:5073Re-query CCDS DB by CCDS ID:45420.1Re-query CCDS DB by GeneID:5073See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45420.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341484.11 ENSP00000345456.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000341484.11Link to Ensembl Protein Viewer:ENSP00000345456.7Re-query CCDS DB by Nucleotide ID:ENST00000341484Re-query CCDS DB by Protein ID:ENSP00000345456
Original member Current member NCBI NM_001134477.3 NP_001127949.1 Accepted alive Link to Nucleotide Sequence:NM_001134477.3Link to Protein Sequence:NP_001127949.1Re-query CCDS DB by Nucleotide ID:NM_001134477Re-query CCDS DB by Protein ID:NP_001127949Link to BLAST:NP_001127949.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127949.1 578 O95453-2 578 100% 0 0

Chromosomal Locations for CCDS 45420.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 14436717 14436772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14446888 14447081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14482638 14482827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14552021 14552095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14554065 14554151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14555654 14555709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14580874 14580943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14582181 14582291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14584347 14584422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14584749 14584791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14586318 14586361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14593301 14593378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14599904 14599960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14604146 14604226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14606484 14606526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14608281 14608319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14609058 14609123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14610644 14610809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14617590 14617650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14627106 14627187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14627269 14627330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGGACTTTTTGCTATTTCAGTTTGGCCTTTGCACTTTTAAGTATGACTACACAGATTCAAAGTATATAA
CGAAGTCATTTAACTTCTATGTTTTCCCGAAACCCTTCAATAGATCCTCACCAGATGTCAAATTTGTTTG
TCAGAGCTCCAGCATTGACTTTCTAGCAAGCCAGGGATTTGATTTTAATAAAGTTTTTCGAAATGGAATT
CCATATTTAAATCAGGAAGAAGAAAGACAGTTAAGAGAGCAGTATGATGAAAAACGTTCACAGGCGAATG
GTGCAGGAGCTCTGTCCTATGTATCTCCTAACACTTCAAAATGTCCTGTCACGATTCCTGAGGATCAAAA
GAAGTTTATTGACCAAGTGGTAGAGAAAATAGAGGATTTATTACAAAGTGAAGAAAACAAGAACTTGGAT
TTAGAGCCATGTACCGGGTTCCAAAGAAAACTAATTTATCAGACTTTGAGCTGGAAGTATCCGAAAGGCA
TTCATGTTGAGACTTTAGAAACTGAAAAGAAGGAGCGATATATAGTTATCAGCAAAGTAGATGAAGAAGA
ACGCAAAAGAAGAGAGCAGCAGAAACATGCCAAAGAACAGGAGGAGCTGAATGATGCTGTGGGATTTTCT
AGAGTCATTCACGCCATTGCTAATTCGGGAAAACTTGTTATTGGACACAATATGCTCTTGGACGTCATGC
ACACAGTTCATCAGTTCTACTGCCCTCTGCCTGCGGACTTAAGTGAGTTTAAAGAGATGACAACATGTGT
TTTCCCCAGACTCTTGGATACTAAATTGATGGCCAGCACACAACCTTTTAAGGATATCATTAACAACACA
TCCCTTGCGGAATTGGAAAAGCGGTTAAAAGAGACACCTTTCAACCCTCCTAAAGTTGAAAGTGCCGAAG
GTTTTCCAAGTTATGACACAGCCTCTGAACAACTCCACGAGGCAGGCTACGATGCCTACATCACAGGGCT
GTGCTTCATCTCCATGGCCAATTACCTAGGTTCTTTTCTCAGCCCTCCAAAAATTCATGTGTCTGCCAGA
TCAAAACTCATTGAACCTTTTTTTAACAAGTTATTTCTTATGAGGGTCATGGATATCCCCTATCTAAACT
TGGAAGGACCAGACTTGCAGCCTAAACGTGATCATGTTCTCCATGTGACATTCCCCAAAGAATGGAAAAC
CAGCGACCTTTACCAGCTTTTCAGTGCCTTTGGTAACATTCAGATATCCTGGATTGATGACACATCAGCA
TTTGTTTCCCTTAGCCAGCCCGAGCAAGTAAAGATTGCTGTCAATACCAGCAAATATGCAGAAAGCTATC
GGATCCAAACCTATGCTGAATATATGGGGAGAAAACAGGAAGAGAAGCAGATCAAAAGAAAGTGGACTGA
AGATAGCTGGAAGGAGGCTGACAGCAAACGGTTAAACCCCCAGTGCATACCCTACACCCTGCAGAATCAC
TATTACCGCAACAATAGTTTTACAGCTCCCAGCACAGTAGGAAAGAGAAATTTGAGTCCTAGTCAAGAGG
AAGCTGGCCTGGAGGACGGAGTGTCAGGGGAGATTTCCGACACTGAGCTTGAGCAGACCGATTCCTGTGC
AGAGCCCCTCTCAGAGGGAAGGAAAAAGGCCAAGAAATTAAAAAGAATGAAGAAGGAGCTTTCTCCAGCA
GGAAGCATCTCGAAGAACAGCCCTGCCACACTCTTTGAAGTTCCTGACACATGGTAA

Translation (578 aa):
MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGI
PYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLD
LEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFS
RVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNT
SLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSAR
SKLIEPFFNKLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSA
FVSLSQPEQVKIAVNTSKYAESYRIQTYAEYMGRKQEEKQIKRKWTEDSWKEADSKRLNPQCIPYTLQNH
YYRNNSFTAPSTVGKRNLSPSQEEAGLEDGVSGEISDTELEQTDSCAEPLSEGRKKAKKLKRMKKELSPA
GSISKNSPATLFEVPDTW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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