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Report for CCDS2870.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2870.1 Public Homo sapiens 3 PRKCD 24 110 108 CCDS HistoryNCBI Gene:5580Re-query CCDS DB by CCDS ID:2870.1Re-query CCDS DB by GeneID:5580See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2870.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330452.8 ENSP00000331602.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330452.8Link to Ensembl Protein Viewer:ENSP00000331602.3Re-query CCDS DB by Nucleotide ID:ENST00000330452Re-query CCDS DB by Protein ID:ENSP00000331602
Original member Current member EBI ENST00000394729.6 ENSP00000378217.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394729.6Link to Ensembl Protein Viewer:ENSP00000378217.2Re-query CCDS DB by Nucleotide ID:ENST00000394729Re-query CCDS DB by Protein ID:ENSP00000378217
Original member Current member EBI ENST00000652449.1 ENSP00000498400.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000652449.1Link to Ensembl Protein Viewer:ENSP00000498400.1Re-query CCDS DB by Nucleotide ID:ENST00000652449Re-query CCDS DB by Protein ID:ENSP00000498400
Original member Current member EBI ENST00000650739.1 ENSP00000498623.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000650739.1Link to Ensembl Protein Viewer:ENSP00000498623.1Re-query CCDS DB by Nucleotide ID:ENST00000650739Re-query CCDS DB by Protein ID:ENSP00000498623
Original member Current member EBI ENST00000654719.1 ENSP00000499558.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000654719.1Link to Ensembl Protein Viewer:ENSP00000499558.1Re-query CCDS DB by Nucleotide ID:ENST00000654719Re-query CCDS DB by Protein ID:ENSP00000499558
Original member Current member NCBI NM_001316327.2 NP_001303256.1 Accepted alive Link to Nucleotide Sequence:NM_001316327.2Link to Protein Sequence:NP_001303256.1Re-query CCDS DB by Nucleotide ID:NM_001316327Re-query CCDS DB by Protein ID:NP_001303256Link to BLAST:NP_001303256.1
Original member Current member NCBI NM_001354679.2 NP_001341608.1 Accepted alive Link to Nucleotide Sequence:NM_001354679.2Link to Protein Sequence:NP_001341608.1Re-query CCDS DB by Nucleotide ID:NM_001354679Re-query CCDS DB by Protein ID:NP_001341608Link to BLAST:NP_001341608.1
Original member Current member NCBI NM_001354680.2 NP_001341609.1 Accepted alive Link to Nucleotide Sequence:NM_001354680.2Link to Protein Sequence:NP_001341609.1Re-query CCDS DB by Nucleotide ID:NM_001354680Re-query CCDS DB by Protein ID:NP_001341609Link to BLAST:NP_001341609.1
Original member Current member NCBI NM_006254.4 NP_006245.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006254.4Link to Protein Sequence:NP_006245.2Re-query CCDS DB by Nucleotide ID:NM_006254Re-query CCDS DB by Protein ID:NP_006245Link to BLAST:NP_006245.2
Original member Current member NCBI NM_212539.2 NP_997704.1 Accepted alive Link to Nucleotide Sequence:NM_212539.2Link to Protein Sequence:NP_997704.1Re-query CCDS DB by Nucleotide ID:NM_212539Re-query CCDS DB by Protein ID:NP_997704Link to BLAST:NP_997704.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303256.1 676 Q05655-1 676 100% 0 0
NP_001341608.1 676 Q05655-1 676 100% 0 0
NP_001341609.1 676 Q05655-1 676 100% 0 0
NP_006245.2 676 Q05655-1 676 100% 0 0
NP_997704.1 676 Q05655-1 676 100% 0 0

Chromosomal Locations for CCDS 2870.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 53178423 53178537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53179577 53179776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53181207 53181267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53181444 53181606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53181701 53181732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53183121 53183206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53183452 53183581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53184874 53184974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53185604 53185700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53185927 53186027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53186167 53186340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53186604 53186695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53187340 53187402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53188720 53188858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53189058 53189246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53189873 53190001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53192108 53192266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2031 nt):
ATGGCGCCGTTCCTGCGCATCGCCTTCAACTCCTATGAGCTGGGCTCCCTGCAGGCCGAGGACGAGGCGA
ACCAGCCCTTCTGTGCCGTGAAGATGAAGGAGGCGCTCAGCACAGAGCGTGGGAAAACACTGGTGCAGAA
GAAGCCGACCATGTATCCTGAGTGGAAGTCGACGTTCGATGCCCACATCTATGAGGGGCGCGTCATCCAG
ATTGTGCTAATGCGGGCAGCAGAGGAGCCAGTGTCTGAGGTGACCGTGGGTGTGTCGGTGCTGGCCGAGC
GCTGCAAGAAGAACAATGGCAAGGCTGAGTTCTGGCTGGACCTGCAGCCTCAGGCCAAGGTGTTGATGTC
TGTTCAGTATTTCCTGGAGGACGTGGATTGCAAACAGTCTATGCGCAGTGAGGACGAGGCCAAGTTCCCA
ACGATGAACCGCCGCGGAGCCATCAAACAGGCCAAAATCCACTACATCAAGAACCATGAGTTTATCGCCA
CCTTCTTTGGGCAACCCACCTTCTGTTCTGTGTGCAAAGACTTTGTCTGGGGCCTCAACAAGCAAGGCTA
CAAATGCAGGCAATGTAACGCTGCCATCCACAAGAAATGCATCGACAAGATCATCGGCAGATGCACTGGC
ACCGCGGCCAACAGCCGGGACACTATATTCCAGAAAGAACGCTTCAACATCGACATGCCGCACCGCTTCA
AGGTTCACAACTACATGAGCCCCACCTTCTGTGACCACTGCGGCAGCCTGCTCTGGGGACTGGTGAAGCA
GGGATTAAAGTGTGAAGACTGCGGCATGAATGTGCACCATAAATGCCGGGAGAAGGTGGCCAACCTCTGC
GGCATCAACCAGAAGCTTTTGGCTGAGGCCTTGAACCAAGTCACCCAGAGAGCCTCCCGGAGATCAGACT
CAGCCTCCTCAGAGCCTGTTGGGATATATCAGGGTTTCGAGAAGAAGACCGGAGTTGCTGGGGAGGACAT
GCAAGACAACAGTGGGACCTACGGCAAGATCTGGGAGGGCAGCAGCAAGTGCAACATCAACAACTTCATC
TTCCACAAGGTCCTGGGCAAAGGCAGCTTCGGGAAGGTGCTGCTTGGAGAGCTGAAGGGCAGAGGAGAGT
ACTTTGCCATCAAGGCCCTCAAGAAGGATGTGGTCCTGATCGACGACGACGTGGAGTGCACCATGGTTGA
GAAGCGGGTGCTGACACTTGCCGCAGAGAATCCCTTTCTCACCCACCTCATCTGCACCTTCCAGACCAAG
GACCACCTGTTCTTTGTGATGGAGTTCCTCAACGGGGGGGACCTGATGTACCACATCCAGGACAAAGGCC
GCTTTGAACTCTACCGTGCCACGTTTTATGCCGCTGAGATAATGTGTGGACTGCAGTTTCTACACAGCAA
GGGCATCATTTACAGGGACCTCAAACTGGACAATGTGCTGCTGGACCGGGATGGCCACATCAAGATTGCC
GACTTTGGGATGTGCAAAGAGAACATATTCGGGGAGAGCCGGGCCAGCACCTTCTGCGGCACCCCTGACT
ATATCGCCCCTGAGATCCTACAGGGCCTGAAGTACACATTCTCTGTGGACTGGTGGTCTTTCGGGGTCCT
TCTGTACGAGATGCTCATTGGCCAGTCCCCCTTCCATGGTGATGATGAGGATGAACTCTTCGAGTCCATC
CGTGTGGACACGCCACATTATCCCCGCTGGATCACCAAGGAGTCCAAGGACATCCTGGAGAAGCTCTTTG
AAAGGGAACCAACCAAGAGGCTGGGAGTGACCGGAAACATCAAAATCCACCCCTTCTTCAAGACCATAAA
CTGGACTCTGCTGGAAAAGCGGAGGTTGGAGCCACCTTTCAGGCCCAAAGTGAAGTCACCCAGAGACTAC
AGTAACTTTGACCAGGAGTTCCTGAACGAGAAGGCGCGCCTCTCCTACAGCGACAAGAACCTCATCGACT
CCATGGACCAGTCTGCATTCGCTGGCTTCTCCTTTGTGAACCCCAAATTCGAGCACCTCCTGGAAGATTG
A

Translation (676 aa):
MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQ
IVLMRAAEEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQPQAKVLMSVQYFLEDVDCKQSMRSEDEAKFP
TMNRRGAIKQAKIHYIKNHEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDKIIGRCTG
TAANSRDTIFQKERFNIDMPHRFKVHNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC
GINQKLLAEALNQVTQRASRRSDSASSEPVGIYQGFEKKTGVAGEDMQDNSGTYGKIWEGSSKCNINNFI
FHKVLGKGSFGKVLLGELKGRGEYFAIKALKKDVVLIDDDVECTMVEKRVLTLAAENPFLTHLICTFQTK
DHLFFVMEFLNGGDLMYHIQDKGRFELYRATFYAAEIMCGLQFLHSKGIIYRDLKLDNVLLDRDGHIKIA
DFGMCKENIFGESRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESI
RVDTPHYPRWITKESKDILEKLFEREPTKRLGVTGNIKIHPFFKTINWTLLEKRRLEPPFRPKVKSPRDY
SNFDQEFLNEKARLSYSDKNLIDSMDQSAFAGFSFVNPKFEHLLED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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