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Report for CCDS5754.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5754.1 Public Homo sapiens 7 LRRN3 24 110 108 CCDS HistoryNCBI Gene:54674Re-query CCDS DB by CCDS ID:5754.1Re-query CCDS DB by GeneID:54674See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5754.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308478.10 ENSP00000312001.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308478.10Link to Ensembl Protein Viewer:ENSP00000312001.5Re-query CCDS DB by Nucleotide ID:ENST00000308478Re-query CCDS DB by Protein ID:ENSP00000312001
Original member Current member EBI ENST00000451085.5 ENSP00000397312.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000451085.5Link to Ensembl Protein Viewer:ENSP00000397312.1Re-query CCDS DB by Nucleotide ID:ENST00000451085Re-query CCDS DB by Protein ID:ENSP00000397312
Original member Current member EBI ENST00000422987.3 ENSP00000412417.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000422987.3Link to Ensembl Protein Viewer:ENSP00000412417.2Re-query CCDS DB by Nucleotide ID:ENST00000422987Re-query CCDS DB by Protein ID:ENSP00000412417
Original member Current member NCBI NM_001099658.2 NP_001093128.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099658.2Link to Protein Sequence:NP_001093128.1Re-query CCDS DB by Nucleotide ID:NM_001099658Re-query CCDS DB by Protein ID:NP_001093128Link to BLAST:NP_001093128.1
Original member Current member NCBI NM_001099660.2 NP_001093130.1 Accepted alive Link to Nucleotide Sequence:NM_001099660.2Link to Protein Sequence:NP_001093130.1Re-query CCDS DB by Nucleotide ID:NM_001099660Re-query CCDS DB by Protein ID:NP_001093130Link to BLAST:NP_001093130.1
Original member Current member NCBI NM_018334.5 NP_060804.3 Accepted alive Link to Nucleotide Sequence:NM_018334.5Link to Protein Sequence:NP_060804.3Re-query CCDS DB by Nucleotide ID:NM_018334Re-query CCDS DB by Protein ID:NP_060804Link to BLAST:NP_060804.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093128.1 708 Q9H3W5 708 100% 0 0
NP_001093130.1 708 Q9H3W5 708 100% 0 0
NP_060804.3 708 Q9H3W5 708 100% 0 0

Chromosomal Locations for CCDS 5754.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 111122773 111124899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2127 nt):
ATGAAGGACATGCCACTCCGAATTCATGTGCTACTTGGCCTAGCTATCACTACACTAGTACAAGCTGTAG
ATAAAAAAGTGGATTGTCCACGGTTATGTACGTGTGAAATCAGGCCTTGGTTTACACCCAGATCCATTTA
TATGGAAGCATCTACAGTGGATTGTAATGATTTAGGTCTTTTAACTTTCCCAGCCAGATTGCCAGCTAAC
ACACAGATTCTTCTCCTACAGACTAACAATATTGCAAAAATTGAATACTCCACAGACTTTCCAGTAAACC
TTACTGGCCTGGATTTATCTCAAAACAATTTATCTTCAGTCACCAATATTAATGTAAAAAAGATGCCTCA
GCTCCTTTCTGTGTACCTAGAGGAAAACAAACTTACTGAACTGCCTGAAAAATGTCTGTCCGAACTGAGC
AACTTACAAGAACTCTATATTAATCACAACTTGCTTTCTACAATTTCACCTGGAGCCTTTATTGGCCTAC
ATAATCTTCTTCGACTTCATCTCAATTCAAATAGATTGCAGATGATCAACAGTAAGTGGTTTGATGCTCT
TCCAAATCTAGAGATTCTGATGATTGGGGAAAATCCAATTATCAGAATCAAAGACATGAACTTTAAGCCT
CTTATCAATCTTCGCAGCCTGGTTATAGCTGGTATAAACCTCACAGAAATACCAGATAACGCCTTGGTTG
GACTGGAAAACTTAGAAAGCATCTCTTTTTACGATAACAGGCTTATTAAAGTACCCCATGTTGCTCTTCA
AAAAGTTGTAAATCTCAAATTTTTGGATCTAAATAAAAATCCTATTAATAGAATACGAAGGGGTGATTTT
AGCAATATGCTACACTTAAAAGAGTTGGGGATAAATAATATGCCTGAGCTGATTTCCATCGATAGTCTTG
CTGTGGATAACCTGCCAGATTTAAGAAAAATAGAAGCTACTAACAACCCTAGATTGTCTTACATTCACCC
CAATGCATTTTTCAGACTCCCCAAGCTGGAATCACTCATGCTGAACAGCAATGCTCTCAGTGCCCTGTAC
CATGGTACCATTGAGTCTCTGCCAAACCTCAAGGAAATCAGCATACACAGTAACCCCATCAGGTGTGACT
GTGTCATCCGTTGGATGAACATGAACAAAACCAACATTCGATTCATGGAGCCAGATTCACTGTTTTGCGT
GGACCCACCTGAATTCCAAGGTCAGAATGTTCGGCAAGTGCATTTCAGGGACATGATGGAAATTTGTCTC
CCTCTTATAGCTCCTGAGAGCTTTCCTTCTAATCTAAATGTAGAAGCTGGGAGCTATGTTTCCTTTCACT
GTAGAGCTACTGCAGAACCACAGCCTGAAATCTACTGGATAACACCTTCTGGTCAAAAACTCTTGCCTAA
TACCCTGACAGACAAGTTCTATGTCCATTCTGAGGGAACACTAGATATAAATGGCGTAACTCCCAAAGAA
GGGGGTTTATATACTTGTATAGCAACTAACCTAGTTGGCGCTGACTTGAAGTCTGTTATGATCAAAGTGG
ATGGATCTTTTCCACAAGATAACAATGGCTCTTTGAATATTAAAATAAGAGATATTCAGGCCAATTCAGT
TTTGGTGTCCTGGAAAGCAAGTTCTAAAATTCTCAAATCTAGTGTTAAATGGACAGCCTTTGTCAAGACT
GAAAATTCTCATGCTGCGCAAAGTGCTCGAATACCATCTGATGTCAAGGTATATAATCTTACTCATCTGA
ATCCATCAACTGAGTATAAAATTTGTATTGATATTCCCACCATCTATCAGAAAAACAGAAAAAAATGTGT
AAATGTCACCACCAAAGGTTTGCACCCTGATCAAAAAGAGTATGAAAAGAATAATACCACAACACTTATG
GCCTGTCTTGGAGGCCTTCTGGGGATTATTGGTGTGATATGTCTTATCAGCTGCCTCTCTCCAGAAATGA
ACTGTGATGGTGGACACAGCTATGTGAGGAATTACTTACAGAAACCAACCTTTGCATTAGGTGAGCTTTA
TCCTCCTCTGATAAATCTCTGGGAAGCAGGAAAAGAAAAAAGTACATCACTGAAAGTAAAAGCAACTGTT
ATAGGTTTACCAACAAATATGTCCTAA

Translation (708 aa):
MKDMPLRIHVLLGLAITTLVQAVDKKVDCPRLCTCEIRPWFTPRSIYMEASTVDCNDLGLLTFPARLPAN
TQILLLQTNNIAKIEYSTDFPVNLTGLDLSQNNLSSVTNINVKKMPQLLSVYLEENKLTELPEKCLSELS
NLQELYINHNLLSTISPGAFIGLHNLLRLHLNSNRLQMINSKWFDALPNLEILMIGENPIIRIKDMNFKP
LINLRSLVIAGINLTEIPDNALVGLENLESISFYDNRLIKVPHVALQKVVNLKFLDLNKNPINRIRRGDF
SNMLHLKELGINNMPELISIDSLAVDNLPDLRKIEATNNPRLSYIHPNAFFRLPKLESLMLNSNALSALY
HGTIESLPNLKEISIHSNPIRCDCVIRWMNMNKTNIRFMEPDSLFCVDPPEFQGQNVRQVHFRDMMEICL
PLIAPESFPSNLNVEAGSYVSFHCRATAEPQPEIYWITPSGQKLLPNTLTDKFYVHSEGTLDINGVTPKE
GGLYTCIATNLVGADLKSVMIKVDGSFPQDNNGSLNIKIRDIQANSVLVSWKASSKILKSSVKWTAFVKT
ENSHAAQSARIPSDVKVYNLTHLNPSTEYKICIDIPTIYQKNRKKCVNVTTKGLHPDQKEYEKNNTTTLM
ACLGGLLGIIGVICLISCLSPEMNCDGGHSYVRNYLQKPTFALGELYPPLINLWEAGKEKSTSLKVKATV
IGLPTNMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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