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Report for CCDS58616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58616.1 Public Homo sapiens 18 TTC39C 24 110 108 CCDS HistoryNCBI Gene:125488Re-query CCDS DB by CCDS ID:58616.1Re-query CCDS DB by GeneID:125488See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58616.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000584250.1 ENSP00000464344.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000584250.1Link to Ensembl Protein Viewer:ENSP00000464344.1Re-query CCDS DB by Nucleotide ID:ENST00000584250Re-query CCDS DB by Protein ID:ENSP00000464344
Original member Current member NCBI NM_001243425.2 NP_001230354.1 Accepted alive Link to Nucleotide Sequence:NM_001243425.2Link to Protein Sequence:NP_001230354.1Re-query CCDS DB by Nucleotide ID:NM_001243425Re-query CCDS DB by Protein ID:NP_001230354Link to BLAST:NP_001230354.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230354.1 76 Q8N584-3 76 100% 0 0

Chromosomal Locations for CCDS 58616.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 24014872 24015038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24019860 24019923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (231 nt):
ATGGCCGGCTCGGAGCAGCAGCGGCCGCGGCGGCGGGACGACGGAGACTCGGACGCGGCAGCGGCGGCGG
CGGCGCCCCTGCAGGACGCGGAGCTGGCCCTGGCCGGCATCAACATGCTGCTCAACAACGGCTTCAGGGA
GTCGGACCAGCTTTTCAAACAATACAGAAAAAGTTTTTTGACTTCTGAGAAAACCTCAGCGCTTCCTGGA
GAAACTCAAAGGCGCTTGTAA

Translation (76 aa):
MAGSEQQRPRRRDDGDSDAAAAAAAPLQDAELALAGINMLLNNGFRESDQLFKQYRKSFLTSEKTSALPG
ETQRRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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