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Report for CCDS6373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6373.1 Public Homo sapiens 8 ST3GAL1 24 110 108 CCDS HistoryNCBI Gene:6482Re-query CCDS DB by CCDS ID:6373.1Re-query CCDS DB by GeneID:6482See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6373.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399640.3 ENSP00000414073.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399640.3Link to Ensembl Protein Viewer:ENSP00000414073.1Re-query CCDS DB by Nucleotide ID:ENST00000399640Re-query CCDS DB by Protein ID:ENSP00000414073
Original member Current member EBI ENST00000521180.5 ENSP00000428540.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000521180.5Link to Ensembl Protein Viewer:ENSP00000428540.1Re-query CCDS DB by Nucleotide ID:ENST00000521180Re-query CCDS DB by Protein ID:ENSP00000428540
Original member Current member EBI ENST00000522652.6 ENSP00000430515.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000522652.6Link to Ensembl Protein Viewer:ENSP00000430515.1Re-query CCDS DB by Nucleotide ID:ENST00000522652Re-query CCDS DB by Protein ID:ENSP00000430515
Original member Current member EBI ENST00000648219.1 ENSP00000497381.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648219.1Link to Ensembl Protein Viewer:ENSP00000497381.1Re-query CCDS DB by Nucleotide ID:ENST00000648219Re-query CCDS DB by Protein ID:ENSP00000497381
Original member Current member NCBI NM_003033.4 NP_003024.1 Accepted alive Link to Nucleotide Sequence:NM_003033.4Link to Protein Sequence:NP_003024.1Re-query CCDS DB by Nucleotide ID:NM_003033Re-query CCDS DB by Protein ID:NP_003024Link to BLAST:NP_003024.1
Original member Current member NCBI NM_173344.3 NP_775479.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173344.3Link to Protein Sequence:NP_775479.1Re-query CCDS DB by Nucleotide ID:NM_173344Re-query CCDS DB by Protein ID:NP_775479Link to BLAST:NP_775479.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003024.1 340 Q11201 340 100% 0 0
NP_775479.1 340 Q11201 340 100% 0 0

Chromosomal Locations for CCDS 6373.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 133459764 133459937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133461875 133461994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133463414 133463459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133464778 133464957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133465894 133466090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133475719 133476024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGGTGACCCTGCGGAAGAGGACCCTGAAAGTGCTCACCTTCCTCGTGCTCTTCATCTTCCTCACCTCCT
TCTTCCTGAACTACTCCCACACCATGGTGGCCACCACCTGGTTCCCCAAGCAGATGGTCCTGGAGCTCTC
CGAGAACCTGAAGAGACTGATCAAGCACAGGCCTTGCACCTGCACCCACTGCATCGGGCAGCGCAAGCTC
TCGGCCTGGTTCGATGAGAGGTTCAACCAGACCATGCAGCCGCTGCTGACCGCCCAGAACGCGCTCTTGG
AGGACGACACCTACCGATGGTGGCTGAGGCTCCAGCGGGAGAAGAAGCCCAATAACTTGAATGACACCAT
CAAGGAGCTGTTCAGAGTGGTGCCTGGGAATGTGGACCCTATGCTGGAGAAGAGGTCGGTGGGCTGCCGG
CGCTGCGCCGTTGTGGGCAACTCGGGCAACCTGAGGGAGTCTTCTTATGGGCCTGAGATAGACAGTCACG
ACTTTGTCCTCAGGATGAACAAGGCGCCCACGGCAGGGTTTGAAGCTGATGTTGGGACCAAGACCACCCA
CCATCTGGTGTACCCTGAGAGCTTCCGGGAGCTGGGAGATAATGTCAGCATGATCCTGGTGCCCTTCAAG
ACCATCGACTTGGAGTGGGTGGTGAGCGCCATCACCACGGGCACCATTTCCCACACCTACATCCCGGTTC
CTGCAAAGATCAGAGTGAAACAGGATAAGATCCTGATCTACCACCCAGCCTTCATCAAGTATGTCTTTGA
CAACTGGCTGCAAGGGCACGGGCGATACCCATCTACCGGCATCCTCTCGGTCATCTTCTCAATGCATGTC
TGCGATGAGGTGGACTTGTACGGCTTCGGGGCAGACAGCAAAGGGAACTGGCACCACTACTGGGAGAACA
ACCCATCCGCGGGGGCTTTTCGCAAGACGGGGGTGCACGATGCAGACTTTGAGTCTAACGTGACGGCCAC
CTTGGCCTCCATCAATAAAATCCGGATCTTCAAGGGGAGATGA

Translation (340 aa):
MVTLRKRTLKVLTFLVLFIFLTSFFLNYSHTMVATTWFPKQMVLELSENLKRLIKHRPCTCTHCIGQRKL
SAWFDERFNQTMQPLLTAQNALLEDDTYRWWLRLQREKKPNNLNDTIKELFRVVPGNVDPMLEKRSVGCR
RCAVVGNSGNLRESSYGPEIDSHDFVLRMNKAPTAGFEADVGTKTTHHLVYPESFRELGDNVSMILVPFK
TIDLEWVVSAITTGTISHTYIPVPAKIRVKQDKILIYHPAFIKYVFDNWLQGHGRYPSTGILSVIFSMHV
CDEVDLYGFGADSKGNWHHYWENNPSAGAFRKTGVHDADFESNVTATLASINKIRIFKGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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