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Report for CCDS43871.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43871.1 Public Homo sapiens 9 CDK5RAP2 24 110 108 CCDS HistoryNCBI Gene:55755Re-query CCDS DB by CCDS ID:43871.1Re-query CCDS DB by GeneID:55755See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43871.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360190.8 ENSP00000353317.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360190.8Link to Ensembl Protein Viewer:ENSP00000353317.4Re-query CCDS DB by Nucleotide ID:ENST00000360190Re-query CCDS DB by Protein ID:ENSP00000353317
Original member Current member NCBI NM_001011649.3 NP_001011649.1 Accepted alive Link to Nucleotide Sequence:NM_001011649.3Link to Protein Sequence:NP_001011649.1Re-query CCDS DB by Nucleotide ID:NM_001011649Re-query CCDS DB by Protein ID:NP_001011649Link to BLAST:NP_001011649.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001011649.1 1814 Q96SN8-4 1814 100% 0 0

Chromosomal Locations for CCDS 43871.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 120389236 120389292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120389741 120389787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120394512 120394638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120400742 120400885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120402806 120403071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120404036 120404113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120408347 120408468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120409127 120409316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120411358 120411474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120415040 120415159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120419788 120419960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120422693 120422741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120437295 120437527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120439399 120439972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120443620 120443742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120447895 120448126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120453456 120453873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120458450 120458622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120460572 120460667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120467860 120467997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120470111 120470220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120471748 120471878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120477350 120477450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120487294 120487437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120491307 120491477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120518427 120518645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120524986 120525078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120527806 120527925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120528744 120528797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120529978 120530140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120536372 120536526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120539041 120539164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120545714 120545790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120550792 120550902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120568321 120568388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120571974 120572041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120579920 120579978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5445 nt):
ATGATGGACTTGGTGTTGGAAGAGGACGTCACCGTCCCTGGGACGCTCAGCGGCTGCAGTGGCCTTGTTC
CCAGTGTACCAGATGACCTGGATGGCATCAACCCCAATGCTGGGTTGGGAAATGGTCTGCTCCCAAATGT
GTCAGAAGAAACAGTGTCTCCCACCAGAGCACGGAACATGAAGGACTTTGAAAATCAAATCACTGAATTG
AAGAAAGAAAACTTTAACCTAAAGCTCCGCATCTATTTCCTTGAGGAAAGAATGCAACAGGAATTTCATG
GCCCCACTGAACATATCTACAAAACTAACATTGAGCTCAAGGTGGAAGTAGAAAGTCTGAAGCGGGAACT
CCAGGAGAGAGAGCAGCTGCTCATCAAAGCCTCCAAAGCAGTTGAGAGCTTAGCTGAAGCAGGTGGCTCT
GAAATCCAGCGGGTGAAAGAAGATGCTCGAAAGAAGGTGCAGCAGGTGGAAGATCTCCTAACTAAAAGAA
TACTCCTTTTGGAAAAGGATGTGACAGCCGCCCAGGCAGAACTGGAAAAGGCCTTTGCAGGGACAGAGAC
GGAGAAGGCTCTTCGGTTGCGTTTGGAAAGCAAGCTTTCAGAGATGAAGAAGATGCACGAGGGGGACTTG
GCGATGGCTCTGGTCCTGGATGAGAAAGACAGACTGATTGAGGAGTTGAAGCTGTCTTTGAAGAGCAAAG
AAGCTTTAATTCAGTGCCTTAAAGAGGAGAAATCTCAGATGGCATGTCCTGATGAGAATGTGTCATCTGG
AGAGCTCCGAGGACTTTGTGCTGCTCCAAGGGAAGAAAAGGAGAGAGAAACTGAGGCTGCACAAATGGAG
CATCAGAAGGAGAGAAACAGCTTTGAAGAGAGGATCCAGGCACTTGAAGAGGACCTGAGAGAGAAGGAAA
GAGAAATTGCTACAGAGAAGAAAAATAGTCTAAAGAGGGATAAAGCCATTCAGGGTTTAACCATGGCATT
AAAATCAAAGGAAAAAAAGGTTGAAGAACTTAACTCTGAAATTGAAAAGCTCAGTGCTGCCTTTGCTAAA
GCCAGAGAGGCCCTACAGAAAGCACAGACCCAGGAATTTCAGGGGTCTGAAGACTATGAGACTGCTCTAT
CAGGAAAGGAAGCCCTTTCGGCTGCGCTGCGCTCACAAAACCTCACCAAGAGTACAGAGAACCACAGACT
GCGTAGAAGCATTAAGAAGATCACCCAGGAGCTGAGTGACTTGCAGCAGGAGAGGGAGAGACTGGAGAAG
GACCTGGAGGAAGCCCATCGAGAGAAGAGCAAAGGAGACTGCACCATCCGTGATCTTAGAAATGAAGTTG
AAAAATTACGCAATGAAGTGAATGAAAGAGAGAAAGCAATGGAAAATCGTTACAAGAGTCTTCTGAGTGA
AAGCAATAAAAAATTGCACAATCAAGAGCAAGTGATCAAACATCTAACAGAAAGTACCAATCAGAAGGAC
GTGTTGCTTCAGAAATTCAATGAAAAAGATTTGGAAGTAATACAGCAGAACTGCTATTTAATGGCTGCAG
AGGATCTTGAGCTCAGGAGTGAAGGCTTAATAACAGAAAAGTGCTCTTCTCAACAGCCACCAGGCAGCAA
AACCATCTTCTCTAAGGAAAAGAAACAATCATCAGACTATGAAGAGCTGATTCAGGTCTTAAAGAAAGAG
CAGGACATCTATACCCATCTGGTCAAATCTCTGCAGGAATCAGACAGTATCAACAACCTGCAGGCTGAGT
TAAACAAGATTTTTGCCCTGCGGAAGCAACTGGAGCAGGATGTGCTTTCATATCAGAATTTGCGGAAGAC
CTTGGAGGAGCAGATCAGCGAAATTCGGAGGCGGGAAGAAGAATCATTTTCACTTTATAGTGATCAAACA
TCTTATCTAAGTATTTGCCTTGAAGAAAACAATCGGTTTCAAGTGGAACATTTTTCTCAAGAAGAACTTA
AGAAAAAGGTCAGTGACCTTATACAGCTAGTGAAGGAGCTGTATACAGACAACCAGCACCTGAAGAAAAC
CATTTTTGATCTCTCCTGCATGGGTTTCCAGGGAAATGGGTTTCCAGATAGACTTGCGTCTACAGAACAA
ACAGAGCTTCTGGCTAGCAAGGAGGACGAGGACACGATCAAAATTGGGGAGGATGACGAGATTAATTTCC
TGAGTGACCAGCATTTGCAGCAGAGTAATGAGATTATGAAAGACCTTTCCAAAGGAGGCTGCAAAAATGG
ATACTTAAGGCACACGGAGTCTAAGATTTCAGATTGTGATGGGGCCCACGCACCTGGCTGCCTAGAAGAA
GGTGCATTCATAAACCTGCTTGCCCCTTTGTTCAATGAGAAGGCCACATTATTACTGGAATCCAGGCCAG
ACCTTCTGAAAGTGGTACGGGAACTGCTTCTGGGACAACTATTCTTGACAGAGCAGGAAGTTTCTGGAGA
ACACCTTGATGGTAAAACTGAGAAGACACCTAAGCAAAAAGGTGAACTTGTACATTTTGTCCAAACCAAC
TCATTTTCCAAGCCACATGATGAACTGAAGTTGTCTTGTGAGGCCCAGCTAGTAAAGGCAGGCGAAGTGC
CCAAGGTAGGACTGAAAGATGCCTCAGTGCAGACTGTGGCCACGGAGGGCGACCTGCTGAGATTCAAGCA
TGAAGCAACAAGAGAGGCTTGGGAAGAGAAACCGATCAACACTGCACTCAGCGCAGAGCATCGGCCAGAG
AACCTGCACGGGGTGCCTGGGTGGCAGGCTGCCCTCCTTTCCCTCCCTGGTATTACCAACAGAGAGGCTA
AGAAGTCCCGCTTGCCAATCCTAATAAAACCATCCCGGTCATTAGGAAATATGTATCGTCTCCCTGCCAC
CCAGGAGGTGGTGACGCAGCTGCAGAGCCAGATCTTGGAGCTGCAGGGGGAGCTGAAGGAGTTTAAAACT
TGTAATAAGCAACTTCACCAAAAGTTAATTCTGGCTGAAGCAGTGATGGAGGGGAGGCCAACGCCCGACA
AAACGTTGCTGAATGCTCAGCCCCCTGTGGGAGCAGCCTACCAGGACAGCCCAGGAGAGCAGAAAGGAAT
TAAAACCACATCTTCTGTCTGGAGAGACAAGGAAATGGACAGTGATCAGCAAAGAAGCTACGAGATTGAC
TCTGAGATTTGCCCACCTGATGACCTTGCCAGCTTGCCATCATGCAAAGAAAATCCTGAAGATGTTCTGA
GCCCAACTTCAGTAGCTACTTACCTGAGTTCCAAGAGTCAGCCTTCTGCTAAAGTCAGTGTGATGGGGAC
TGATCAGTCAGAGAGCATTAATACCTCAAATGAGACAGAATACTTAAAACAGAAAATCCATGACTTGGAA
ACTGAGCTGGAAGGCTACCAGAATTTCATATTTCAGCTTCAAAAGCACTCCCAGTGCAGTGAGGCCATAA
TTACAGTTTTGTGTGGGACAGAAGGGGCCCAGGATGGCTTGAGCAAGCCCAAGAATGGTTCTGATGGGGA
AGAAATGACCTTTTCAAGTTTGCACCAAGTGCGATACGTGAAACACGTGAAAATCCTCGGTCCGCTGGCC
CCAGAGATGATTGACAGCAGGGTGCTGGAGAACCTCAAACAGCAGCTGGAGGAACAGGAATACAAGCTGC
AGAAGGAGCAGAATTTGAACATGCAACTTTTCAGTGAGATCCATAATCTGCAGAATAAGTTCAGAGATCT
CTCACCTCCCAGATACGATTCATTAGTTCAGTCCCAAGCCAGGGAGCTCTCCCTTCAACGGCAGCAGATT
AAGGATGGCCATGGCATCTGTGTCATCTCCCGTCAACACATGAACACCATGATTAAGGCATTTGAGGAGT
TGCTGCAGGCCAGTGATGTGGATTACTGTGTGGCCGAGGGTTTCCAGGAACAGCTGAATCAATGTGCTGA
GCTGCTGGAGAAATTGGAAAAGCTATTTCTCAACGGAAAATCAGTTGGAGTGGAAATGAACACCCAGAAT
GAACTGATGGAGAGGATTGAGGAAGACAACTTAACCTACCAACATCTTCTGCCTGAATCTCCTGAGCCTT
CAGCCTCTCATGCGCTCTCTGATTATGAAACATCTGAAAAGTCCTTCTTCTCACGAGACCAGAAGCAAGA
TAATGAGACAGAGAAGACTTCAGTTATGGTGAACAGTTTTTCTCAAGACTTACTAATGGAACACATACAG
GAAATTCGAACTTTGAGAAAGCGTTTAGAAGAATCTATTAAAACAAATGAGAAGCTACGGAAACAGTTGG
AACGGCAAGGATCTGAATTTGTTCAAGGTTCTACAAGCATTTTTGCTTCTGGTTCAGAGCTTCATAGTTC
TCTAACATCAGAAATTCATTTCTTGAGGAAGCAGAACCAGGCCCTCAATGCAATGCTCATTAAAGGATCC
AGAGATAAACAGAAGGAGAATGACAAATTACGAGAGTCCCTCTCCAGGAAGACCGTGAGCCTGGAGCACC
TTCAGCGGGAGTATGCCAGCGTGAAGGAAGAAAATGAAAGGCTGCAGAAAGAAGGCAGCGAGAAGGAGAG
ACACAACCAGCAGCTGATCCAGGAGGTCCGCTGCAGCGGCCAGGAGCTGAGCAGGGTGCAGGAGGAGGTG
AAGTTGAGGCAGCAGCTGCTCTCACAGAATGACAAGCTATTGCAGTCTCTCCGAGTGGAGCTGAAGGCGT
ATGAGAAGCTGGATGAAGAGCACAGGAGACTGAGAGATGGTGACAAATATCCCATGGAAAGTGATAATTC
ATTTGATCTGTTTGATTCCTCCCAGGCAGTGACACCAAAATCAGTTTCAGAGACTCCTCCACTCTCTGGG
AATGACACGGACTCCCTCTCCTGCGACAGTGGCAGTTCGGCAACTAGCACTCCGTGTGTGTCCCGCCTGG
TCACTGGCCACCACCTGTGGGCCAGCAAGAATGGCCGCCATGTCCTGGGCCTGATTGAGGACTATGAGGC
CCTGCTCAAACAGATCAGCCAGGGACAGAGGCTCCTTGCTGAAATGGACATTCAAACCCAAGAGGCTCCC
AGCTCCACAAGTCAAGAGCTGGGAACAAAGGGTCCACACCCAGCACCACTGAGCAAGTTTGTGAGCAGTG
TGAGCACGGCCAAGCTGACCCTGGAAGAGGCCTACAGGCGGCTGAAGCTTCTCTGGAGAGTCTCACTCCC
CGAGGATGGCCAGTGCCCCCTTCACTGTGAGCAGATTGGAGAAATGAAGGCAGAGGTCACCAAACTACAT
AAAAAATTGTTTGAACAAGAAAAGAAGTTGCAAAACACCATGAAGCTTTTGCAGCTGAGCAAGCGCCAGG
AAAAAGTCATCTTTGATCAATTGGTCGTAACCCACAAAATCCTTCGGAAGGCCAGAGGAAACCTGGAGCT
TAGGCCTGGGGGAGCCCATCCAGGAACATGCAGTCCCAGCAGACCAGGCTCCTGA

Translation (1814 aa):
MMDLVLEEDVTVPGTLSGCSGLVPSVPDDLDGINPNAGLGNGLLPNVSEETVSPTRARNMKDFENQITEL
KKENFNLKLRIYFLEERMQQEFHGPTEHIYKTNIELKVEVESLKRELQEREQLLIKASKAVESLAEAGGS
EIQRVKEDARKKVQQVEDLLTKRILLLEKDVTAAQAELEKAFAGTETEKALRLRLESKLSEMKKMHEGDL
AMALVLDEKDRLIEELKLSLKSKEALIQCLKEEKSQMACPDENVSSGELRGLCAAPREEKERETEAAQME
HQKERNSFEERIQALEEDLREKEREIATEKKNSLKRDKAIQGLTMALKSKEKKVEELNSEIEKLSAAFAK
AREALQKAQTQEFQGSEDYETALSGKEALSAALRSQNLTKSTENHRLRRSIKKITQELSDLQQERERLEK
DLEEAHREKSKGDCTIRDLRNEVEKLRNEVNEREKAMENRYKSLLSESNKKLHNQEQVIKHLTESTNQKD
VLLQKFNEKDLEVIQQNCYLMAAEDLELRSEGLITEKCSSQQPPGSKTIFSKEKKQSSDYEELIQVLKKE
QDIYTHLVKSLQESDSINNLQAELNKIFALRKQLEQDVLSYQNLRKTLEEQISEIRRREEESFSLYSDQT
SYLSICLEENNRFQVEHFSQEELKKKVSDLIQLVKELYTDNQHLKKTIFDLSCMGFQGNGFPDRLASTEQ
TELLASKEDEDTIKIGEDDEINFLSDQHLQQSNEIMKDLSKGGCKNGYLRHTESKISDCDGAHAPGCLEE
GAFINLLAPLFNEKATLLLESRPDLLKVVRELLLGQLFLTEQEVSGEHLDGKTEKTPKQKGELVHFVQTN
SFSKPHDELKLSCEAQLVKAGEVPKVGLKDASVQTVATEGDLLRFKHEATREAWEEKPINTALSAEHRPE
NLHGVPGWQAALLSLPGITNREAKKSRLPILIKPSRSLGNMYRLPATQEVVTQLQSQILELQGELKEFKT
CNKQLHQKLILAEAVMEGRPTPDKTLLNAQPPVGAAYQDSPGEQKGIKTTSSVWRDKEMDSDQQRSYEID
SEICPPDDLASLPSCKENPEDVLSPTSVATYLSSKSQPSAKVSVMGTDQSESINTSNETEYLKQKIHDLE
TELEGYQNFIFQLQKHSQCSEAIITVLCGTEGAQDGLSKPKNGSDGEEMTFSSLHQVRYVKHVKILGPLA
PEMIDSRVLENLKQQLEEQEYKLQKEQNLNMQLFSEIHNLQNKFRDLSPPRYDSLVQSQARELSLQRQQI
KDGHGICVISRQHMNTMIKAFEELLQASDVDYCVAEGFQEQLNQCAELLEKLEKLFLNGKSVGVEMNTQN
ELMERIEEDNLTYQHLLPESPEPSASHALSDYETSEKSFFSRDQKQDNETEKTSVMVNSFSQDLLMEHIQ
EIRTLRKRLEESIKTNEKLRKQLERQGSEFVQGSTSIFASGSELHSSLTSEIHFLRKQNQALNAMLIKGS
RDKQKENDKLRESLSRKTVSLEHLQREYASVKEENERLQKEGSEKERHNQQLIQEVRCSGQELSRVQEEV
KLRQQLLSQNDKLLQSLRVELKAYEKLDEEHRRLRDGDKYPMESDNSFDLFDSSQAVTPKSVSETPPLSG
NDTDSLSCDSGSSATSTPCVSRLVTGHHLWASKNGRHVLGLIEDYEALLKQISQGQRLLAEMDIQTQEAP
SSTSQELGTKGPHPAPLSKFVSSVSTAKLTLEEAYRRLKLLWRVSLPEDGQCPLHCEQIGEMKAEVTKLH
KKLFEQEKKLQNTMKLLQLSKRQEKVIFDQLVVTHKILRKARGNLELRPGGAHPGTCSPSRPGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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