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Report for CCDS86378.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86378.1 Public Homo sapiens 14 TINF2 24 110 108 CCDS HistoryNCBI Gene:26277Re-query CCDS DB by CCDS ID:86378.1Re-query CCDS DB by GeneID:26277See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86378.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000646753.1 ENSP00000494065.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646753.1Link to Ensembl Protein Viewer:ENSP00000494065.1Re-query CCDS DB by Nucleotide ID:ENST00000646753Re-query CCDS DB by Protein ID:ENSP00000494065
Original member Current member NCBI NM_001363668.2 NP_001350597.1 Accepted alive Link to Nucleotide Sequence:NM_001363668.2Link to Protein Sequence:NP_001350597.1Re-query CCDS DB by Nucleotide ID:NM_001363668Re-query CCDS DB by Protein ID:NP_001350597Link to BLAST:NP_001350597.1

Chromosomal Locations for CCDS 86378.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 24239797 24239931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24240064 24240155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24240263 24240330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24240419 24240875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24241020 24241116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24241204 24241311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24241675 24241776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24242141 24242332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGGCTACGCCCCTGGTGGCGGGTCCCGCAGCTCTACGCTTCGCCGCCGCGGCTAGCTGGCAGGTTGTGC
GC
GGACGCTGCGTGGAACATTTTCCGCGAGTACTGGAGTTTCTGCGATCTCTGCGCGCTGTTGCCCCTGG
C
TTGGTTCGCTACCGGCACCACGAACGCCTTTGTATGGGCCTAAAGGCCAAGACAAAGCAGGATCTGAGG
AAG
ATTTTGGAGGCACAGGAAACTTTTTACCAGCAGGTGAAGCAGCTGTCAGAGGCTCCTGTGGATTTGG
CC
TCGAAGCTGCAGGAACTTGAACAAGAGTATGGGGAACCCTTTCTGGCTGCCATGGAAAAGCTGCTTTT
T
GAGTACTTGTGTCAGCTGGAGAAAGCACTGCCTACACCGCAGGCACAGCAGCTTCAGGATGTGCTGAGT
TGG
ATGCAGCCTGGAGTCTCTATCACCTCTTCTCTTGCCTGGAGACAATATGGTGTGGACATGGGGTGGC
TG
CTTCCAGAGTGCTCTGTTACTGACTCAGTGAACCTGGCTGAGCCCATGGAACAGAATCCTCCTCAGCA
A
CAAAGACTAGCACTCCACAATCCCCTGCCAAAAGCCAAGCCTGGCACACATCTTCCTCAGGGACCATCT
TCA
AGGACGCACCCAGAACCTCTAGCTGGCCGACACTTCAATCTGGCCCCTCTAGGCCGACGAAGAGTTC
AG
TCCCAATGGGCCTCCACTAGGGGAGGCCATAAGGAGCGCCCCACAGTCATGCTGTTTCCCTTTAGGAA
T
CTCGGCTCACCAACCCAGGTCATATCTAAGCCTGAGAGCAAGGAAGAACATGCGATATACACAGCAGAC
CTA
GCCATGGGCACAAGAGCAGCCTCCACTGGGAAGTCTAAGAGTCCATGCCAGACCCTGGGGGGAAGGG
CT
CTGAAGGAGAACCCAGTTGACTTGCCTGCCACAGAGCAAAAGGAGAATTGCTTGGATTGCTACATGGA
C
CCCCTGAGACTATCATTATTACCTCCTAGGGCCAGGAAGCCAGTGTGTCCTCCGTCTCTGTGCAGCTCC
GTC
ATTACCATAGGGGACTTGGTTTTAGACTCTGATGAGGAAGAAAATGGCCAGGGGGAAGGAAAGGAAT
CT
CTGGAAAACTATCAGAAGACAAAGTTTGACACCTTGATACCCACTCTCTGTGAATACCTACCCCCTTC
T
GGCCACGGTGCCATACCTGTTTCTTCCTGTGACTGTAGAGACAGTTCTAGACCTTTGTGA


Translation (416 aa):
MATPLVAGPAALRFAAAASWQVVRGRCVEHFPRVLEFLRSLRAVAPGLVRYRHHERLCMGLKAKTKQDLR
K
ILEAQETFYQQVKQLSEAPVDLASKLQ
ELEQEYGEPFLAAMEKLLFEYLCQLEKALPTPQAQQLQDVLS
W
MQPGVSITSSLAWRQYGVDMGWLLP
ECSVTDSVNLAEPMEQNPPQQQRLALHNPLPKAKPGTHLPQGPS
S
RTHPEPLAGRHFNLAPLGRRRVQSQWASTRGGHKERPTVMLFPFRNLGSPTQVISKPESKEEHAIYTAD
L
AMGTRAASTGKSKSPCQTLGGRALKENPVDLPATEQK
ENCLDCYMDPLRLSLLPPRARKPVCPPSLCSS
V
ITIGDLVLDSDEEENGQGEGK
ESLENYQKTKFDTLIPTLCEYLPPSGHGAIPVSSCDCRDSSRPL



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser