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Report for CCDS86284.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86284.1 Public Homo sapiens 12 MANSC1 24 110 108 CCDS HistoryNCBI Gene:54682Re-query CCDS DB by CCDS ID:86284.1Re-query CCDS DB by GeneID:54682See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86284.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396349.3 ENSP00000379638.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396349.3Link to Ensembl Protein Viewer:ENSP00000379638.3Re-query CCDS DB by Nucleotide ID:ENST00000396349Re-query CCDS DB by Protein ID:ENSP00000379638
Original member Current member NCBI NM_001363613.2 NP_001350542.1 Accepted alive Link to Nucleotide Sequence:NM_001363613.2Link to Protein Sequence:NP_001350542.1Re-query CCDS DB by Nucleotide ID:NM_001363613Re-query CCDS DB by Protein ID:NP_001350542Link to BLAST:NP_001350542.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350542.1 397 Q9H8J5-2 397 100% 0 0

Chromosomal Locations for CCDS 86284.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 12330027 12330958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12338420 12338560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12343092 12343173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12343276 12343314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGTTCTTCGGGGGAGAAGGGAGCTTGACTTACACTTTGGGAATCAGAGGCAATGAGCCCGTATATACTT
CAACTCAAGAAGACTGCATTAATTCTTGCTGTTCAACAAAAAACATATCAGGGGACAAAGCATGTAACTT
GATGATCTTCGACACTCGAAAAACAGCTAGACAACCCAACTGCTACCTATTTTTCTGTCCCAACGAGGAA
GCCTGTCCATTGAAACCAGCAAAAGGACTTATGAGTTACAGGATAATTACAGATTTTCCATCTTTGACCA
GAAATTTGCCAAGCCAAGAGTTACCCCAGGAAGATTCTCTCTTACATGGCCAATTTTCACAAGCAGTCAC
TCCCCTAGCCCATCATCACACAGATTATTCAAAGCCCACCGATATCTCATGGAGAGACACACTTTCTCAG
AAGTTTGGATCCTCAGATCACTTGGAGAAACTATTTAAGATGGATGAAGCAAGTGCCCAGCTCCTTGCTT
ATAAGGAAAAAGGCCATTCTCAGAGTTCACAATTTTCCTCTGATCAAGAAATAGCTCATCTGCTGCCTGA
AAATGTGAGTGCGCTCCCAGCTACGGTGGCAGTTGCTTCTCCACATACCACCTCGGCTACTCCAAAGCCC
GCCACCCTTCTACCCACCAATGCTTCAGTGACACCTTCTGGGACTTCCCAGCCACAGCTGGCCACCACAG
CTCCACCTGTAACCACTGTCACTTCTCAGCCTCCCACGACCCTCATTTCTACAGTTTTTACACGGGCTGC
GGCTACACTCCAAGCAATGGCTACAACAGCAGTTCTGACTACCACCTTTCAGGCACCTACGGACTCGAAA
GGCAGCTTAGAAACCATACCGTTTACAGAAATCTCCAACCTAACTTTGAACACAGGGAATGTGTATAACC
CTACTGCACTTTCTATGTCAAATGTGGAGTCTTCCACTATGAATAAAACTGCTTCCTGGGAAGGTAGGGA
GGCCAGTCCAGGCAGTTCCTCCCAGGGCAGTGTTCCAGAAAATCAGTACGGCCTTCCATTTGAAAAATGG
CTTCTTATCGGGTCCCTGCTCTTTGGTGTCCTGTTCCTGGTGATAGGCCTCGTCCTCCTGGGTAGAATCC
TCTCGGAATCACTCCGCAGGAAACGTTACTCAAGACTGGATTATTTGATCAATGGGATCTATGTGGACAT
CTAA

Translation (397 aa):
MFFGGEGSLTYTLGIRGNEPVYTSTQEDCINSCCSTKNISGDKACNLMIFDTRKTARQPNCYLFFCPNEE
ACPLKPAKGLMSYRIITDFPSLTRNLPSQELPQEDSLLHGQFSQAVTPLAHHHTDYSKPTDISWRDTLSQ
KFGSSDHLEKLFKMDEASAQLLAYKEKGHSQSSQFSSDQEIAHLLPENVSALPATVAVASPHTTSATPKP
ATLLPTNASVTPSGTSQPQLATTAPPVTTVTSQPPTTLISTVFTRAAATLQAMATTAVLTTTFQAPTDSK
GSLETIPFTEISNLTLNTGNVYNPTALSMSNVESSTMNKTASWEGREASPGSSSQGSVPENQYGLPFEKW
LLIGSLLFGVLFLVIGLVLLGRILSESLRRKRYSRLDYLINGIYVDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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