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Report for CCDS12392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12392.1 Public Homo sapiens 19 SUGP2 24 110 108 CCDS HistoryNCBI Gene:10147Re-query CCDS DB by CCDS ID:12392.1Re-query CCDS DB by GeneID:10147See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12392.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337018.10 ENSP00000337926.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000337018.10Link to Ensembl Protein Viewer:ENSP00000337926.5Re-query CCDS DB by Nucleotide ID:ENST00000337018Re-query CCDS DB by Protein ID:ENSP00000337926
Original member Current member EBI ENST00000452918.7 ENSP00000389380.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000452918.7Link to Ensembl Protein Viewer:ENSP00000389380.1Re-query CCDS DB by Nucleotide ID:ENST00000452918Re-query CCDS DB by Protein ID:ENSP00000389380
Original member Current member EBI ENST00000601879.5 ENSP00000472286.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000601879.5Link to Ensembl Protein Viewer:ENSP00000472286.1Re-query CCDS DB by Nucleotide ID:ENST00000601879Re-query CCDS DB by Protein ID:ENSP00000472286
Original member Current member NCBI NM_001017392.5 NP_001017392.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001017392.5Link to Protein Sequence:NP_001017392.2Re-query CCDS DB by Nucleotide ID:NM_001017392Re-query CCDS DB by Protein ID:NP_001017392Link to BLAST:NP_001017392.2
Original member Current member NCBI NM_001321697.2 NP_001308626.1 Accepted alive Link to Nucleotide Sequence:NM_001321697.2Link to Protein Sequence:NP_001308626.1Re-query CCDS DB by Nucleotide ID:NM_001321697Re-query CCDS DB by Protein ID:NP_001308626Link to BLAST:NP_001308626.1
Original member Current member NCBI NM_001352071.2 NP_001339000.1 Accepted alive Link to Nucleotide Sequence:NM_001352071.2Link to Protein Sequence:NP_001339000.1Re-query CCDS DB by Nucleotide ID:NM_001352071Re-query CCDS DB by Protein ID:NP_001339000Link to BLAST:NP_001339000.1
Original member Current member NCBI NM_014884.5 NP_055699.2 Accepted alive Link to Nucleotide Sequence:NM_014884.5Link to Protein Sequence:NP_055699.2Re-query CCDS DB by Nucleotide ID:NM_014884Re-query CCDS DB by Protein ID:NP_055699Link to BLAST:NP_055699.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017392.2 1082 Q8IX01-1 1082 100% 0 0
NP_001308626.1 1082 Q8IX01-1 1082 100% 0 0
NP_001339000.1 1082 Q8IX01-1 1082 100% 0 0
NP_055699.2 1082 Q8IX01-1 1082 100% 0 0

Chromosomal Locations for CCDS 12392.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 18994366 18994486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18995144 18995280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19001613 19001674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19004168 19004646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19008317 19008428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19009855 19010342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19019109 19019229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19024619 19026226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19030951 19031071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3249 nt):
ATGGCAGCCAGACGAATTACACAGGAGACTTTTGATGCTGTATTACAAGAAAAAGCCAAACGATATCACA
TGGATGCCAGTGGTGAGGCTGTAAGCGAAACTCTTCAGTTTAAAGCTCAAGATCTCTTAAGGGCAGTCCC
AAGATCCAGAGCAGAGATGTATGATGACGTCCACAGCGATGGCAGATACTCCCTCAGTGGATCTGTAGCT
CACTCTAGAGATGCCGGAAGAGAAGGCCTGAGAAGTGACGTATTTCCAGGGCCTTCCTTCAGATCAAGCA
ACCCTTCCATCAGTGATGACAGCTACTTTCGCAAAGAATGTGGCCGGGATCTGGAATTTTCTCACTCTGA
TTCTCGGGACCAGGTCATTGGCCACCGGAAATTGGGGCATTTCCGTTCTCAGGACTGGAAATTTGCGCTC
CGTGGTTCTTGGGAACAAGACTTTGGCCATCCAGTTTCTCAAGAGTCCTCTTGGTCACAGGAGTATAGTT
TTGGTCCCTCTGCAGTTTTGGGGGACTTTGGATCTTCCAGGCTGATTGAGAAAGAGTGTTTGGAGAAGGA
GAGTCGGGATTATGACGTGGACCATCCTGGGGAGGCTGACTCTGTGCTTAGGGGCGGCAGTCAAGTCCAG
GCCAGAGGTCGAGCTCTAAACATCGTTGACCAGGAAGGTTCCCTCCTAGGAAAGGGGGAGACTCAGGGCC
TGCTCACAGCTAAGGGGGGTGTTGGGAAACTTGTCACATTGAGAAATGTGAGCACAAAAAAAATACCCAC
CGTGAATCGTATTACTCCCAAAACTCAGGGCACTAACCAAATCCAGAAAAACACTCCAAGTCCTGATGTG
ACCCTGGGGACAAACCCAGGGACAGAAGATATCCAGTTCCCCATTCAGAAGATCCCTCTGGGGCTGGATC
TGAAGAATCTTCGGCTCCCCAGAAGAAAGATGAGCTTTGACATCATAGATAAGTCTGATGTTTTTTCAAG
ATTTGGGATAGAAATAATCAAATGGGCAGGATTCCACACCATAAAAGATGATATTAAATTTTCCCAACTT
TTCCAGACTCTCTTTGAACTTGAAACAGAAACCTGTGCTAAAATGCTTGCCTCATTCAAATGTTCCTTAA
AACCAGAGCACAGAGATTTTTGCTTTTTTACTATCAAATTTTTAAAGCACTCTGCTTTGAAAACACCCAG
AGTTGATAATGAGTTTTTAAACATGCTTTTAGACAAAGGTGCTGTGAAGACCAAAAATTGCTTTTTTGAA
ATCATAAAGCCTTTTGACAAGTACATAATGAGACTTCAAGACCGGCTTCTGAAGAGTGTCACACCTTTGC
TTATGGCCTGCAATGCCTACGAGCTAAGTGTCAAGATGAAGACCCTCAGTAACCCCCTGGACTTGGCTCT
TGCCCTAGAAACCACCAACTCTCTCTGCCGGAAGTCTTTGGCCCTTTTGGGACAGACATTTTCCTTGGCC
TCTTCTTTCCGGCAGGAGAAAATCTTAGAAGCTGTCGGCCTGCAAGATATAGCTCCCTCACCTGCTGCGT
TTCCAAACTTCGAAGACTCCACTTTGTTTGGGCGAGAGTACATAGACCACCTGAAGGCCTGGCTAGTCAG
CAGCGGATGTCCCCTCCAGGTTAAGAAAGCCGAACCAGAGCCGATGCGAGAGGAGGAGAAAATGATTCCT
CCTACGAAACCTGAAATTCAGGCCAAGGCTCCAAGTAGTCTGAGTGATGCTGTCCCCCAGCGAGCAGATC
ACAGGGTAGTGGGCACCATCGACCAGCTTGTGAAACGTGTCATCGAAGGCAGCCTGTCTCCCAAAGAGAG
AACTCTTCTCAAAGAGGACCCTGCTTACTGGTTTTTGTCTGATGAAAATAGTCTGGAGTATAAATATTAC
AAGCTGAAGTTGGCAGAAATGCAGCGGATGAGCGAGAACTTGCGAGGAGCCGACCAGAAGCCGACCTCAG
CAGACTGTGCAGTGAGGGCCATGCTGTACTCCCGGGCTGTCCGCAACCTCAAGAAGAAACTCCTTCCGTG
GCAGCGGCGGGGGCTCCTCCGTGCTCAAGGGCTCCGGGGCTGGAAGGCGAGGAGAGCGACCACCGGGACC
CAGACCCTCCTATCCTCAGGCACCAGGCTGAAACACCACGGCCGGCAGGCTCCAGGCCTCTCACAGGCAA
AACCATCCCTGCCAGACAGAAATGATGCTGCCAAGGACTGCCCGCCAGACCCAGTTGGACCTTCTCCTCA
GGACCCCAGCTTAGAAGCCTCAGGCCCATCCCCCAAGCCAGCAGGAGTGGACATCTCTGAAGCACCTCAG
ACCTCTTCTCCCTGCCCATCTGCTGACATTGACATGAAGACAATGGAGACTGCAGAGAAACTGGCTAGAT
TTGTTGCTCAGGTGGGACCAGAGATCGAACAATTCAGCATAGAAAACAGCACCGATAACCCTGACCTGTG
GTTTCTACATGACCAAAATAGTTCTGCTTTCAAATTCTATCGAAAGAAAGTGTTTGAACTATGTCCATCA
ATTTGTTTCACGTCATCTCCGCACAACCTTCACACTGGTGGTGGTGACACCACGGGTTCTCAGGAGAGCC
CCGTGGACCTCATGGAAGGGGAAGCAGAGTTTGAAGACGAGCCCCCTCCGCGGGAGGCTGAGCTGGAGAG
CCCAGAGGTGATGCCTGAGGAGGAGGACGAGGACGATGAGGATGGGGGAGAGGAGGCCCCCGCTCCTGGA
GGGGCGGGCAAGTCTGAGGGCAGCACCCCTGCCGACGGCCTTCCCGGCGAGGCTGCCGAGGACGACCTGG
CTGGAGCACCTGCCTTGTCACAGGCCTCCTCAGGTACCTGCTTCCCTCGGAAGAGGATCAGCAGCAAGTC
ATTGAAGGTTGGCATGATTCCAGCTCCCAAGAGAGTGTGTCTCATCCAGGAGCCAAAAGTCCATGAACCA
GTTCGAATTGCCTATGACAGGCCTCGGGGTCGTCCCATGTCCAAAAAGAAGAAACCCAAGGACTTGGACT
TCGCCCAGCAGAAGCTGACCGATAAGAACCTGGGCTTCCAGATGCTGCAGAAGATGGGCTGGAAGGAGGG
CCATGGCCTGGGCTCCCTCGGAAAGGGCATCAGGGAGCCGGTCAGCGTGGGAACCCCCTCGGAAGGGGAA
GGGTTGGGTGCTGACGGGCAGGAGCACAAAGAAGACACATTCGATGTGTTCCGACAGAGGATGATGCAGA
TGTACAGACACAAGCGGGCCAACAAATAG

Translation (1082 aa):
MAARRITQETFDAVLQEKAKRYHMDASGEAVSETLQFKAQDLLRAVPRSRAEMYDDVHSDGRYSLSGSVA
HSRDAGREGLRSDVFPGPSFRSSNPSISDDSYFRKECGRDLEFSHSDSRDQVIGHRKLGHFRSQDWKFAL
RGSWEQDFGHPVSQESSWSQEYSFGPSAVLGDFGSSRLIEKECLEKESRDYDVDHPGEADSVLRGGSQVQ
ARGRALNIVDQEGSLLGKGETQGLLTAKGGVGKLVTLRNVSTKKIPTVNRITPKTQGTNQIQKNTPSPDV
TLGTNPGTEDIQFPIQKIPLGLDLKNLRLPRRKMSFDIIDKSDVFSRFGIEIIKWAGFHTIKDDIKFSQL
FQTLFELETETCAKMLASFKCSLKPEHRDFCFFTIKFLKHSALKTPRVDNEFLNMLLDKGAVKTKNCFFE
IIKPFDKYIMRLQDRLLKSVTPLLMACNAYELSVKMKTLSNPLDLALALETTNSLCRKSLALLGQTFSLA
SSFRQEKILEAVGLQDIAPSPAAFPNFEDSTLFGREYIDHLKAWLVSSGCPLQVKKAEPEPMREEEKMIP
PTKPEIQAKAPSSLSDAVPQRADHRVVGTIDQLVKRVIEGSLSPKERTLLKEDPAYWFLSDENSLEYKYY
KLKLAEMQRMSENLRGADQKPTSADCAVRAMLYSRAVRNLKKKLLPWQRRGLLRAQGLRGWKARRATTGT
QTLLSSGTRLKHHGRQAPGLSQAKPSLPDRNDAAKDCPPDPVGPSPQDPSLEASGPSPKPAGVDISEAPQ
TSSPCPSADIDMKTMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQNSSAFKFYRKKVFELCPS
ICFTSSPHNLHTGGGDTTGSQESPVDLMEGEAEFEDEPPPREAELESPEVMPEEEDEDDEDGGEEAPAPG
GAGKSEGSTPADGLPGEAAEDDLAGAPALSQASSGTCFPRKRISSKSLKVGMIPAPKRVCLIQEPKVHEP
VRIAYDRPRGRPMSKKKKPKDLDFAQQKLTDKNLGFQMLQKMGWKEGHGLGSLGKGIREPVSVGTPSEGE
GLGADGQEHKEDTFDVFRQRMMQMYRHKRANK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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