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Report for CCDS41367.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41367.1 Public Homo sapiens 1 CHI3L2 24 110 108 CCDS HistoryNCBI Gene:1117Re-query CCDS DB by CCDS ID:41367.1Re-query CCDS DB by GeneID:1117See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41367.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000524472.5 ENSP00000432049.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000524472.5Link to Ensembl Protein Viewer:ENSP00000432049.1Re-query CCDS DB by Nucleotide ID:ENST00000524472Re-query CCDS DB by Protein ID:ENSP00000432049
Original member Current member EBI ENST00000466741.5 ENSP00000437086.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000466741.5Link to Ensembl Protein Viewer:ENSP00000437086.1Re-query CCDS DB by Nucleotide ID:ENST00000466741Re-query CCDS DB by Protein ID:ENSP00000437086
Original member Current member NCBI NM_001025199.2 NP_001020370.1 Accepted alive Link to Nucleotide Sequence:NM_001025199.2Link to Protein Sequence:NP_001020370.1Re-query CCDS DB by Nucleotide ID:NM_001025199Re-query CCDS DB by Protein ID:NP_001020370Link to BLAST:NP_001020370.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020370.1 311 Q15782-5 311 100% 0 0

Chromosomal Locations for CCDS 41367.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 111230909 111230943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111231238 111231294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111234907 111235057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111235639 111235763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111236024 111236153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111238750 111238932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111241327 111241443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 111242227 111242364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGCTCTACCAGACCATCAACAGTCTCAAAACCAAGAATCCCAAACTGAAAATTCTCTTGTCCATTGGAG
GGTACCTGTTTGGTTCCAAAGGGTTCCACCCTATGGTGGATTCTTCTACATCACGCTTGGAATTCATTAA
CTCCATAATCCTGTTTCTGAGGAACCATAACTTTGATGGACTGGATGTAAGCTGGATCTACCCAGATCAG
AAAGAAAACACTCATTTCACTGTGCTGATTCATGAGTTAGCAGAAGCCTTTCAGAAGGACTTCACAAAAT
CCACCAAGGAAAGGCTTCTCTTGACTGCGGGCGTATCTGCAGGGAGGCAAATGATTGATAACAGCTATCA
AGTTGAGAAACTGGCAAAAGATCTGGATTTCATCAACCTCCTGTCCTTTGACTTCCATGGGTCTTGGGAA
AAGCCCCTTATCACTGGCCACAACAGCCCTCTGAGCAAGGGGTGGCAGGACAGAGGGCCAAGCTCCTACT
ACAATGTGGAATATGCTGTGGGGTACTGGATACATAAGGGAATGCCATCAGAGAAGGTGGTCATGGGCAT
CCCCACATATGGGCACTCCTTCACACTGGCCTCTGCAGAAACCACCGTGGGGGCCCCTGCCTCTGGCCCT
GGAGCTGCTGGACCCATCACAGAGTCTTCAGGCTTCCTGGCCTATTATGAGATCTGCCAGTTCCTGAAAG
GAGCCAAGATCACGCGGCTCCAGGATCAGCAGGTTCCCTACGCAGTCAAGGGGAACCAGTGGGTGGGCTA
TGATGATGTGAAGAGTATGGAGACCAAGGTTCAGTTCTTAAAGAATTTAAACCTGGGAGGAGCCATGATC
TGGTCTATTGACATGGATGACTTCACTGGCAAATCCTGCAACCAGGGCCCTTACCCTCTTGTCCAAGCAG
TCAAGAGAAGCCTTGGCTCCCTGTGA

Translation (311 aa):
MLYQTINSLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDVSWIYPDQ
KENTHFTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQMIDNSYQVEKLAKDLDFINLLSFDFHGSWE
KPLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKGMPSEKVVMGIPTYGHSFTLASAETTVGAPASGP
GAAGPITESSGFLAYYEICQFLKGAKITRLQDQQVPYAVKGNQWVGYDDVKSMETKVQFLKNLNLGGAMI
WSIDMDDFTGKSCNQGPYPLVQAVKRSLGSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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