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Report for CCDS42406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42406.1 Public Homo sapiens 18 DLGAP1 24 110 108 CCDS HistoryNCBI Gene:9229Re-query CCDS DB by CCDS ID:42406.1Re-query CCDS DB by GeneID:9229See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42406.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400147.6 ENSP00000383011.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400147.6Link to Ensembl Protein Viewer:ENSP00000383011.2Re-query CCDS DB by Nucleotide ID:ENST00000400147Re-query CCDS DB by Protein ID:ENSP00000383011
Original member Current member NCBI NM_001003809.3 NP_001003809.1 Accepted alive Link to Nucleotide Sequence:NM_001003809.3Link to Protein Sequence:NP_001003809.1Re-query CCDS DB by Nucleotide ID:NM_001003809Re-query CCDS DB by Protein ID:NP_001003809Link to BLAST:NP_001003809.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003809.1 675 O14490-2 675 100% 0 0

Chromosomal Locations for CCDS 42406.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 3499185 3499394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3502493 3502645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3508570 3508661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3534194 3534615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3567490 3567581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3581875 3582248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3729135 3729375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3742335 3742512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3814059 3814273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3845232 3845282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2028 nt):
ATGAACTTAATTTTCCATAAAGACATTCTGTTTGGCATTCCAGCTAATAAGGTTCCACAAGATGAATGGA
CAGGGTACACCCCACGAGGTAAAGATGATGAAATTCCATGCCGAAGAATGCGGAGTGGCAGTTATATCAA
GGCCATGGGGGATGAAGACAGTGGAGACTCAGACACGAGTCCTAAGCCTTCTCCAAAAGTTGCTGCGCGG
AGAGAAAGCTATCTCAAGGCTACTCAGCCATCCCTTACAGAACTCACCACACTCAAAATCTCCAATGAAC
ACTCACCCAAACTCCAGATCCGGAGTCATAGTTACCTGAGGGCAGTGAGTGAAGTCTCCATCAACCGGAG
CCTGGACAGCCTGGACCCTGCAGGCTTGCTCACATCACCAAAGTTCCGCTCCAGGAATGAGAGCTACATG
CGAGCCATGAGCACCATCAGCCAGGTGAGCGAGATGGAAGTGAACGGGCAGTTCGAGTCCGTGTGCGAGT
CCGTGTTCAGCGAGCTGGAGTCGCAGGCCGTGGAAGCGCTGGACCTGCCCATGCCCGGCTGCTTCCGCAT
GCGGAGCCACAGCTATGTGCGGGCCATTGAGAAAGGCTGCTCCCAGGACGACGAGTGCGTGTCCCTGAGG
TCGTCCTCGCCGCCGCGCACCACCACCACCGTTAGGACCATCCAGAGCAGCACGGTGTCATCTTGCATTA
CAACATATAAGAAGACACCACCTCCAGTCCCACCCAGAACTACCACGAAACCTTTCATTTCTATCACAGC
CCAGAGTAGCACAGAGTCAGCCCAGGATGCCTACATGGACGGACAGGGCCAGCGAGGAGATATTATCAGC
CAGTCTGGACTCAGCAACTCCACCGAGAGCCTGGACAGTATGAAGGCTCTGACAGCCGCCATCGAAGCTG
CAAACGCCCAGATCCATGGCCCTGCCAGTCAACACATGGGCAATAACACTGCCACCGTCACCACCACGAC
TACCATAGCCACCGTCACCACGGAGGACAGGAAGAAGGACCACTTTAAGAAAAATCGATGCCTGTCTATC
GGGATACAGGTGGATGATGCTGAAGAACCTGACAAAACAGGGGAGAATAAAGCACCCAGTAAGTTCCAGT
CCGTGGGAGTGCAAGTAGAAGAAGAGAAGTGCTTCCGCAGGTTCACTCGATCCAACAGTGTGACGACAGC
AGTACAGGCCGACCTGGACTTCCATGATAATCTGGAAAATTCTCTGGAATCTATAGAGGACAATTCGTGT
CCTGGCCCCATGGCCAGACAGTTCTCCCGCGATGCCAGCACCTCCACAGTCAGCATTCAGGGCTCAGGAA
ACCATTACCATGCCTGTGCCGCCGATGATGACTTTGACACGGATTTTGACCCCTCTATTCTGCCTCCTCC
GGACCCCTGGATTGACTCTATCACTGAAGACCCTCTGGAGGCCGTGCAAAGGTCAGTGTGCCACCGGGAT
GGCCACTGGTTCCTGAAGCTTCTCCAGGCAGAGCGAGACCGCATGGAGGGGTGGTGTCAACAGATGGAGC
GGGAAGAACGGGAAAACAACCTGCCCGAAGACATTCTAGGAAAAATCCGAACCGCAGTGGGCAGTGCCCA
ACTTCTCATGGCCCAGAAATTCTACCAGTTCAGAGAACTGTGTGAAGAAAACCTGAATCCTAATGCTCAT
CCAAGACCCACCTCCCAGGATTTGGCGGGGTTTTGGGACATGCTGCAGTTGTCCATAGAAAATATTAGTA
TGAAATTTGATGAACTTCATCAGTTAAAGGCCAATAATTGGAAACAGATGGATCCTCTTGACAAGAAGGA
GAGAAGGGCCCCTCCTCCAGTGCCAAAGAAGCCGGCGAAGGGCCCCGCGCCGCTGATCCGGGAGCGCTCG
CTGGAGAGCTCGCAGCGCCAGGAGGCCCGCAAGCGCCTGATGGCCGCCAAGCGCGCCGCGTCCGTCCGCC
AGAACTCGGCCACCGAGAGCGCCGAGAGCATCGAGATCTACATCCCCGAGGCGCAGACCCGGCTCTGA

Translation (675 aa):
MNLIFHKDILFGIPANKVPQDEWTGYTPRGKDDEIPCRRMRSGSYIKAMGDEDSGDSDTSPKPSPKVAAR
RESYLKATQPSLTELTTLKISNEHSPKLQIRSHSYLRAVSEVSINRSLDSLDPAGLLTSPKFRSRNESYM
RAMSTISQVSEMEVNGQFESVCESVFSELESQAVEALDLPMPGCFRMRSHSYVRAIEKGCSQDDECVSLR
SSSPPRTTTTVRTIQSSTVSSCITTYKKTPPPVPPRTTTKPFISITAQSSTESAQDAYMDGQGQRGDIIS
QSGLSNSTESLDSMKALTAAIEAANAQIHGPASQHMGNNTATVTTTTTIATVTTEDRKKDHFKKNRCLSI
GIQVDDAEEPDKTGENKAPSKFQSVGVQVEEEKCFRRFTRSNSVTTAVQADLDFHDNLENSLESIEDNSC
PGPMARQFSRDASTSTVSIQGSGNHYHACAADDDFDTDFDPSILPPPDPWIDSITEDPLEAVQRSVCHRD
GHWFLKLLQAERDRMEGWCQQMEREERENNLPEDILGKIRTAVGSAQLLMAQKFYQFRELCEENLNPNAH
PRPTSQDLAGFWDMLQLSIENISMKFDELHQLKANNWKQMDPLDKKERRAPPPVPKKPAKGPAPLIRERS
LESSQRQEARKRLMAAKRAASVRQNSATESAESIEIYIPEAQTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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