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Report for CCDS1674.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1674.1 Public Homo sapiens 2 ATP6V1C2 24 110 108 CCDS HistoryNCBI Gene:245973Re-query CCDS DB by CCDS ID:1674.1Re-query CCDS DB by GeneID:245973See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1674.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381661.3 ENSP00000371077.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381661.3Link to Ensembl Protein Viewer:ENSP00000371077.3Re-query CCDS DB by Nucleotide ID:ENST00000381661Re-query CCDS DB by Protein ID:ENSP00000371077
Original member Current member NCBI NM_144583.4 NP_653184.2 Accepted alive Link to Nucleotide Sequence:NM_144583.4Link to Protein Sequence:NP_653184.2Re-query CCDS DB by Nucleotide ID:NM_144583Re-query CCDS DB by Protein ID:NP_653184Link to BLAST:NP_653184.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653184.2 381 Q8NEY4-2 381 100% 0 0

Chromosomal Locations for CCDS 1674.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 10722850 10722978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10726502 10726569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10753981 10754066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10764331 10764425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10768719 10768810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10771839 10771937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10772542 10772610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10774788 10774880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10774978 10775071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10778572 10778669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10782243 10782375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10783174 10783263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGTCGGAGTTTTGGTTAATTTCTGCCCCTGGCGATAAGGAAAATTTGCAAGCTCTGGAGAGGATGAATA
CTGTAACCTCCAAGTCCAACCTGTCTTATAATACCAAATTCGCTATTCCTGACTTCAAGGTGGGGACCTT
GGATTCCCTGGTTGGCCTCTCTGATGAGTTGGGGAAACTCGACACCTTTGCTGAAAGCCTCATAAGGAGA
ATGGCTCAGAGCGTGGTGGAAGTCATGGAGGACTCAAAGGGGAAGGTCCAGGAGCACCTCCTGGCAAACG
GAGTTGACTTAACATCCTTTGTGACCCACTTTGAATGGGACATGGCCAAATATCCTGTCAAGCAGCCGCT
CGTGAGTGTGGTGGACACAATAGCCAAGCAACTGGCGCAGATCGAGATGGACCTGAAGTCCCGAACGGCC
GCCTACAACACTCTGAAGACAAACCTGGAGAACCTGGAAAAGAAATCCATGGGGAACCTCTTCACCCGGA
CACTGAGTGATATTGTGAGCAAAGAGGACTTCGTGCTGGATTCTGAATATCTCGTCACACTTCTGGTCAT
CGTCCCCAAACCAAACTACTCACAATGGCAAAAAACCTACGAATCTCTCTCAGACATGGTGGTCCCTCGA
TCAACCAAACTCATTACTGAGGACAAGGAAGGGGGCCTTTTCACTGTGACTCTGTTTCGAAAAGTGATTG
AAGATTTCAAAACCAAGGCCAAAGAAAACAAGTTCACTGTTCGTGAATTTTACTATGATGAGAAGGAAAT
TGAAAGGGAAAGGGAGGAGATGGCCAGATTGCTGTCTGATAAGAAGCAACAGTATGGCCCCCTGCTGCGC
TGGCTCAAGGTGAACTTCAGTGAAGCCTTCATTGCCTGGATCCACATCAAGGCCCTGAGAGTGTTTGTGG
AGTCCGTGCTCAGGTATGGACTACCAGTGAACTTCCAGGCAGTGCTCCTGCAGCCGCATAAGAAGTCATC
CACCAAGCGTTTAAGAGAGGTTCTAAACTCTGTCTTCCGACATCTGGATGAAGTAGCCGCTACAAGTATA
CTGGATGCATCTGTGGAGATCCCGGGACTGCAACTCAATAACCAAGACTATTTTCCTTATGTCTACTTCC
ATATTGACCTTAGTCTTCTTGACTAG

Translation (381 aa):
MSEFWLISAPGDKENLQALERMNTVTSKSNLSYNTKFAIPDFKVGTLDSLVGLSDELGKLDTFAESLIRR
MAQSVVEVMEDSKGKVQEHLLANGVDLTSFVTHFEWDMAKYPVKQPLVSVVDTIAKQLAQIEMDLKSRTA
AYNTLKTNLENLEKKSMGNLFTRTLSDIVSKEDFVLDSEYLVTLLVIVPKPNYSQWQKTYESLSDMVVPR
STKLITEDKEGGLFTVTLFRKVIEDFKTKAKENKFTVREFYYDEKEIEREREEMARLLSDKKQQYGPLLR
WLKVNFSEAFIAWIHIKALRVFVESVLRYGLPVNFQAVLLQPHKKSSTKRLREVLNSVFRHLDEVAATSI
LDASVEIPGLQLNNQDYFPYVYFHIDLSLLD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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