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Report for CCDS46756.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46756.1 Public Homo sapiens 3 VGLL4 24 110 108 CCDS HistoryNCBI Gene:9686Re-query CCDS DB by CCDS ID:46756.1Re-query CCDS DB by GeneID:9686See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46756.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000424529.6 ENSP00000402878.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000424529.6Link to Ensembl Protein Viewer:ENSP00000402878.2Re-query CCDS DB by Nucleotide ID:ENST00000424529Re-query CCDS DB by Protein ID:ENSP00000402878
Original member Current member NCBI NM_001128221.3 NP_001121693.1 Accepted alive Link to Nucleotide Sequence:NM_001128221.3Link to Protein Sequence:NP_001121693.1Re-query CCDS DB by Nucleotide ID:NM_001128221Re-query CCDS DB by Protein ID:NP_001121693Link to BLAST:NP_001121693.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121693.1 206 Q14135-5 206 100% 0 0

Chromosomal Locations for CCDS 46756.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 11558556 11558827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11559332 11559455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11564797 11565019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 11568605 11568606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGAACAAGACTGCCAATGGAGACTGCCGCAGAGACCCCCGGGAGCGGAGCCGCAGCCCCATCGAGCGCG
CTGTGGCCCCCACCATGAGCCTGCACGGCAGCCACCTGTACACCTCCCTCCCCAGCCTTGGCCTGGAGCA
GCCCCTCGCACTGACCAAGAACAGCCTGGACGCCAGCAGGCCAGCCGGCCTCTCGCCCACACTGACCCCG
GGGGAGCGGCAGCAGAACCGGCCCTCCGTGATCACCTGTGCCTCGGCTGGCGCCCGCAACTGCAACCTCT
CGCACTGCCCCATCGCGCACAGCGGCTGTGCCGCGCCCGGGCCTGCCAGCTACCGGAGGCCACCGAGCGC
TGCCACCACCTGTGACCCCGTGGTGGAGGAGCATTTCCGCAGGAGCCTGGGCAAGAATTACAAGGAGCCC
GAGCCGGCACCCAACTCCGTGTCCATCACGGGCTCCGTGGACGACCACTTTGCCAAAGCTCTGGGTGACA
CGTGGCTCCAGATCAAAGCGGCCAAGGACGGAGCATCCAGCAGCCCTGAGTCCGCCTCTCGCAGGGGCCA
GCCCGCCAGCCCCTCTGCCCACATGGTCAGCCACAGTCACTCCCCCTCTGTGGTCTCCTGA

Translation (206 aa):
MNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTP
GERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEP
EPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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