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Report for CCDS3519.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3519.1 Public Homo sapiens 4 TMPRSS11A 24 110 108 CCDS HistoryNCBI Gene:339967Re-query CCDS DB by CCDS ID:3519.1Re-query CCDS DB by GeneID:339967See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3519.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334830.11 ENSP00000334611.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000334830.11Link to Ensembl Protein Viewer:ENSP00000334611.7Re-query CCDS DB by Nucleotide ID:ENST00000334830Re-query CCDS DB by Protein ID:ENSP00000334611
Original member Current member NCBI NM_182606.4 NP_872412.3 Accepted alive Link to Nucleotide Sequence:NM_182606.4Link to Protein Sequence:NP_872412.3Re-query CCDS DB by Nucleotide ID:NM_182606Re-query CCDS DB by Protein ID:NP_872412Link to BLAST:NP_872412.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872412.3 421 Q6ZMR5-1 421 100% 0 0

Chromosomal Locations for CCDS 3519.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 67911342 67911503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67914588 67914730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67918973 67919232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67922755 67922926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67924128 67924166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67929880 67930040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67931993 67932060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67944510 67944637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67946450 67946571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 67963383 67963393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGATGTATCGGACAGTGGGATTTGGCACCCGAAGCAGAAATCTGAAGCCATGGATGATTGCCGTTCTCA
TTGTGTTGTCCCTGACAGTGGTGGCAGTGACCATAGGTCTCCTGGTTCACTTCCTAGTATTTGACCAAAA
AAAGGAGTACTATCATGGCTCCTTTAAAATTTTAGATCCACAAATCAATAACAATTTCGGACAAAGCAAC
ACATATCAACTTAAGGACTTACGAGAGACGACCGAAAATTTGGTGAGTCAGGTGGATGAGATATTTATAG
ATTCAGCCTGGAAGAAAAATTATATCAAGAACCAAGTAGTCAGACTGACTCCAGAGGAAGATGGTGTGAA
AGTAGATGTCATTATGGTGTTCCAGTTCCCCTCTACTGAACAAAGGGCAGTAAGAGAGAAGAAAATCCAA
AGCATCTTAAATCAGAAGATAAGGAATTTAAGAGCCTTGCCAATAAATGCCTCATCAGTTCAAGTTAATG
CAATGAGCTCATCAACAGGGGAGTTAACTGTCCAAGCAAGTTGTGGTAAACGAGTTGTTCCATTAAACGT
CAACAGAATAGCATCTGGAGTCATTGCACCCAAGGCGGCCTGGCCTTGGCAAGCTTCCCTTCAGTATGAT
AACATCCATCAGTGTGGGGCCACCTTGATTAGTAACACATGGCTTGTCACTGCAGCACACTGCTTCCAGA
AGTATAAAAATCCACATCAATGGACTGTTAGTTTTGGAACAAAAATCAACCCTCCCTTAATGAAAAGAAA
TGTCAGAAGATTTATTATCCATGAGAAGTACCGCTCTGCAGCAAGAGAGTACGACATTGCTGTTGTGCAG
GTCTCTTCCAGAGTCACCTTTTCGGATGACATACGCCAGATTTGTTTGCCAGAAGCCTCTGCATCCTTCC
AACCAAATTTGACTGTCCACATCACAGGATTTGGAGCACTTTACTATGGTGGGGAATCCCAAAATGATCT
CCGAGAAGCCAGAGTGAAAATCATAAGTGATGATGTCTGCAAGCAACCACAGGTGTATGGCAATGATATA
AAACCTGGAATGTTCTGTGCCGGATATATGGAAGGAATTTATGATGCCTGCAGGGGTGATTCTGGGGGAC
CTTTAGTCACAAGGGATCTGAAAGATACGTGGTATCTCATTGGAATTGTAAGCTGGGGAGATAACTGTGG
TCAAAAGGACAAGCCTGGAGTCTACACACAAGTGACTTATTACCGAAACTGGATTGCTTCAAAAACAGGC
ATCTAA

Translation (421 aa):
MMYRTVGFGTRSRNLKPWMIAVLIVLSLTVVAVTIGLLVHFLVFDQKKEYYHGSFKILDPQINNNFGQSN
TYQLKDLRETTENLVSQVDEIFIDSAWKKNYIKNQVVRLTPEEDGVKVDVIMVFQFPSTEQRAVREKKIQ
SILNQKIRNLRALPINASSVQVNAMSSSTGELTVQASCGKRVVPLNVNRIASGVIAPKAAWPWQASLQYD
NIHQCGATLISNTWLVTAAHCFQKYKNPHQWTVSFGTKINPPLMKRNVRRFIIHEKYRSAAREYDIAVVQ
VSSRVTFSDDIRQICLPEASASFQPNLTVHITGFGALYYGGESQNDLREARVKIISDDVCKQPQVYGNDI
KPGMFCAGYMEGIYDACRGDSGGPLVTRDLKDTWYLIGIVSWGDNCGQKDKPGVYTQVTYYRNWIASKTG
I


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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