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Report for CCDS47169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47169.1 Public Homo sapiens 4 CFAP96 24 110 108 CCDS HistoryNCBI Gene:441054Re-query CCDS DB by CCDS ID:47169.1Re-query CCDS DB by GeneID:441054See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47169.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378850.5 ENSP00000368127.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378850.5Link to Ensembl Protein Viewer:ENSP00000368127.4Re-query CCDS DB by Nucleotide ID:ENST00000378850Re-query CCDS DB by Protein ID:ENSP00000368127
Original member Current member NCBI NM_001114357.3 NP_001107829.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001114357.3Link to Protein Sequence:NP_001107829.1Re-query CCDS DB by Nucleotide ID:NM_001114357Re-query CCDS DB by Protein ID:NP_001107829Link to BLAST:NP_001107829.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107829.1 309 A7E2U8 309 100% 0 0

Chromosomal Locations for CCDS 47169.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 185429412 185429511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185431982 185432201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185436046 185436183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185436284 185436359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185440540 185440719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185444964 185445130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185449596 185449644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGCCTGCGGAAGGAGGAAAAACGGACATGGAAAGGATTGGCCTCTTTAGTGAGATGGAATATATTACTG
TGGGTGATAAATATGTGTCACAATTTAATCGACCCTTTAATGAGGCTGCAAGCAAAAATAAACAGATGCT
ACCTGGAGGGTCCAAAGAAATGTCAGATCTTCAGGCAGGTTATTTTGATCCCCATTTTGTAAGGATTTTT
GAAGGTGAAGGCTACATAAATCTGAATCAAGTGAGGAGACGGGATATGGTGGAAGCAGCCAAAAAAAATC
TAGGCAAAGCATTCCTCCCTAGTAATGGAGAGAAAAAGCCATGTGGCTTAGGAAGCTACTATGGAACAAT
AGGTGGTCCAGTCCCATTTTTCAGCGCACAGTCAAAACCTCGAGAAAAATACAAGGCACCTGGAAAGAAT
TTATACACAAACCCGGGAAAGAAAGGAACTGGATATGGCTATGCAAATATTACCATAGGTAAACAGTTTT
CACACTCTGCCGACTTCTATGATGCAGCAAAACTAAAGTATAAGAAAGCGAATGAAGAGCACCATCGTTT
ACTTAAAGGAGCACCATTTAAGTTAAATCTTCACCCAAGGGACTATTTTGACGCTAATCCTTATTTTTCT
GAGGAATCTTTACCACCAATTAAAAAAGAAGAGAAGAAGAAAACAATTTCAAATACTTTTAAACCGTCTT
CTCCTGGTAAAAAGCCTGGTGGAATGAAGGCAGGAACATTTGATCCTTACCCATCACATTCTGCTGACCC
TTATGTGGCTAAATTGGCAAATATTTCTGGCAAAGATGATAAGATTTTCCACCCACCAAGTGGACCAAAA
AGCAGACCAGTTGAAAGTATAATGACTTTGAATGTCAGAAGGGCACTAAATTCAAAGAACTACAAGACTT
CTTCAGTACCATCCTATTAG

Translation (309 aa):
MPAEGGKTDMERIGLFSEMEYITVGDKYVSQFNRPFNEAASKNKQMLPGGSKEMSDLQAGYFDPHFVRIF
EGEGYINLNQVRRRDMVEAAKKNLGKAFLPSNGEKKPCGLGSYYGTIGGPVPFFSAQSKPREKYKAPGKN
LYTNPGKKGTGYGYANITIGKQFSHSADFYDAAKLKYKKANEEHHRLLKGAPFKLNLHPRDYFDANPYFS
EESLPPIKKEEKKKTISNTFKPSSPGKKPGGMKAGTFDPYPSHSADPYVAKLANISGKDDKIFHPPSGPK
SRPVESIMTLNVRRALNSKNYKTSSVPSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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