NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29175.1 Public Mus musculus 18 Pcdhb8 23 108 98 CCDS HistoryNCBI Gene:93879Re-query CCDS DB by CCDS ID:29175.1Re-query CCDS DB by GeneID:93879See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29175.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051163.2 ENSMUSP00000054371.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051163.2Link to Ensembl Protein Viewer:ENSMUSP00000054371.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000051163Re-query CCDS DB by Protein ID:ENSMUSP00000054371
Original member Current member NCBI NM_053133.1 NP_444363.1 Accepted alive Link to Nucleotide Sequence:NM_053133.1Link to Protein Sequence:NP_444363.1Re-query CCDS DB by Nucleotide ID:NM_053133Re-query CCDS DB by Protein ID:NP_444363Link to BLAST:NP_444363.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444363.1 779 Q91XZ2 779 100% 0 0

Chromosomal Locations for CCDS 29175.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37355271 37357610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2340 nt):
ATGGAGACAGCGCTAACAAAAACGCCAGAGAAAAGGCAAGTCATTTTCCTTGCTATATTGTTGCTTTTGT
GGGAGGCTAGTTCTGAGGCAATTAGCTATTCCATGCCAGAAGAAACGGAGAGTGGCTACTTGGTGGCTAA
CCTGGCACAAGATCTGGGGCTCAGGGTTGGGGAACTGACCACTAGAGGGGCACGAATCCATCACAATGGT
AACAAAGAGCTCTTGCAGCTTGATGCAGAGAGAGGGAATTTGCTCCTGAAGGAAAAACCAGATCGCGAAG
CACTGTGTGGGGCGACAGAACCCTGTGTGCTGCACTTCCAGATCATACTAGAAAACCCTGTGCAGTTCTT
TCAAACAGACTTGCAGTTCACAGATATAAACGACCATTTCCCAGAGTTCCCTGACACAGAAATGCTCCTA
AAAATTCAAGAAATTGCCCAGCCAGGGACTGTGTTTCCTCTGAAGGCAGCTCAGGACCCTGACATAGGGA
GCAACGCTGTTCAGAACTACACAGTCAGTCCCAACCTCCATTTCCATGTCGTTACTCTCAGTCGCTCAGA
TGACAGGAAATACCCAGAGCTGGTGCTGGACAGAGCCCTGGACAGGGAGGAGCAGCCTGAACTCACTTTA
ATCCTCACTGCTCTGGATGGCGGAGCTCCACCCAAGTCTGGGACAACCACTGTTCGGATTGAAGTCGTGG
ACATCAATGATAATGCCCCCCAGTTCTTACAGTCACTCTATGCGGTGGAGGTCCCTGAGAACAGTCCCCT
CAATGCCTTAGTTGTCACTGTCTCTGCCAGGGATTTAGATGCTGGGATACATGGCAATGTAGCCTACTCT
CTGTTTCAAGGCGGGGGAGGTCCTCAGCCATTTGTAATAGATGAAATCACAGGAGAAATTCGACTTAAAG
GGGCATTGGATTTTGAAGCAACTTCATACTATACCATGGAAATTGTAGCCACAGACAGTGGTGGTCTTTC
AGGAAAATGCACTGTAGCTATCCAGGTGTTGGATGTGAACGACAATGCCCCTAAACTCACCATATCTTCG
CTCACTAGTTCCATCCCAGAAAATGCTCCGGAGGCTGTAGTTGCTGTTTTCAGTGTCTCTGACCCAGATT
CGGGGGACAATGGAAGGATGGTGTGTTCAATTCAGAACGGACTTCCATTTCTTTTAAAACCCACATTCAA
GAACTTTTACACCTTAGTCACGGAGAGACCCCTGGATAGAGAGAGCAACGCTGAGTACAACATCACAATC
ACGGTCTCTGACCTGGGCACACCCAGGCTCACAACCCAGCACACCATAACAGTGCAAGTGTCCGACATCA
ACGATAATGCTCCTGCCTTCACTCAAACCTCTTACACCTTGTTTGTTCACGAGAACAACAGCCCTGCCCT
GCACATAGGCACCATCAGCGCCACAGACTCAGACTCTGGCTCCAATGGCCTTATTATCTACTCGTTGCTG
CCGCCCCATGACCAGCAGCTGGGCCTTGCCTCGCTGATCTCCATCAACTCAGACAACGGGCAGCTGTTTG
CGCTCAGGGCGCTGGACTACGAGGCCCTGCAGGCCTTCGAGTTCCACGTGGGCGCCACAGACAGAGGCTC
GCCCGCGCTCAGCTCAGAGGCTCTGGTGCGCGTAGTGGTGCTGGATGACAATGACAATGCGCCCTTCGTG
CTCTACCCACTGCAAAACGCTTCTGCGCCCTGCACTGAGCTGCTGCCCAGGGCTGCGGAGCCTGGCTACC
TGATCACCAAGGTGGTGGCAGTGGACCGCGACTCTGGCCAGAATGCCTGGCTGTCATTCCAGCTGCTCAA
GGCCACAGAGCCCGGGCTGTTCAGCGTGTGGGCGCACAATGGCGAAGTGCGCACCACCAGGCTGCTGAGC
GAGCGAGATGCACCCAAGCACAGGCTGCTGCTGCTGGTCAAGGACAATGGAGAGCCTCTGCGCTCTGCTA
GTGTCATGCTGCAGGTGCTAGTGGTGGATGGCTTCTCTCAGCCCTACCTGCCTCTGCCAGAGGTGGCGCT
CAACCCCACACAGGAAGAAGACATGCTCACTCTCTATCTGGTTATTGCCTTGGCTTCTGTGTCTTCACTT
TTCCTCTTGTCTGTGCTGCTGTTTGTGGGGGTGAAGTTGTGCAAGAAGGCCAGGGAGGCTTCTCTGGCTG
ACTGCTCTATTCCTGAGGGACACTTTCCTAGCCACTTGGTGGATGTCAGTGGTGCGGGGACCTTATCCCA
GAGTTACCATTATGAGGTCTGTCTGACTGAGGACTCTGGGACCTCAGATTTCAAGTTCATGAACCCCATT
ATTCCTAGTAGTCTCCTTCAGGACTCTTAG

Translation (779 aa):
METALTKTPEKRQVIFLAILLLLWEASSEAISYSMPEETESGYLVANLAQDLGLRVGELTTRGARIHHNG
NKELLQLDAERGNLLLKEKPDREALCGATEPCVLHFQIILENPVQFFQTDLQFTDINDHFPEFPDTEMLL
KIQEIAQPGTVFPLKAAQDPDIGSNAVQNYTVSPNLHFHVVTLSRSDDRKYPELVLDRALDREEQPELTL
ILTALDGGAPPKSGTTTVRIEVVDINDNAPQFLQSLYAVEVPENSPLNALVVTVSARDLDAGIHGNVAYS
LFQGGGGPQPFVIDEITGEIRLKGALDFEATSYYTMEIVATDSGGLSGKCTVAIQVLDVNDNAPKLTISS
LTSSIPENAPEAVVAVFSVSDPDSGDNGRMVCSIQNGLPFLLKPTFKNFYTLVTERPLDRESNAEYNITI
TVSDLGTPRLTTQHTITVQVSDINDNAPAFTQTSYTLFVHENNSPALHIGTISATDSDSGSNGLIIYSLL
PPHDQQLGLASLISINSDNGQLFALRALDYEALQAFEFHVGATDRGSPALSSEALVRVVVLDDNDNAPFV
LYPLQNASAPCTELLPRAAEPGYLITKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTRLLS
ERDAPKHRLLLLVKDNGEPLRSASVMLQVLVVDGFSQPYLPLPEVALNPTQEEDMLTLYLVIALASVSSL
FLLSVLLFVGVKLCKKAREASLADCSIPEGHFPSHLVDVSGAGTLSQSYHYEVCLTEDSGTSDFKFMNPI
IPSSLLQDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH