NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25379.1 Public Mus musculus 11 Krt27 23 108 98 CCDS HistoryNCBI Gene:16675Re-query CCDS DB by CCDS ID:25379.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25379.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017732.2 ENSMUSP00000017732.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017732.2Link to Ensembl Protein Viewer:ENSMUSP00000017732.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000017732Re-query CCDS DB by Protein ID:ENSMUSP00000017732
Original member Current member NCBI NM_010666.2 NP_034796.1 Accepted alive Link to Nucleotide Sequence:NM_010666.2Link to Protein Sequence:NP_034796.1Re-query CCDS DB by Nucleotide ID:NM_010666Re-query CCDS DB by Protein ID:NP_034796Link to BLAST:NP_034796.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034796.1 448 Q9Z320 448 100% 0 0

Chromosomal Locations for CCDS 25379.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 99345737 99345873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99346485 99346534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99346751 99346968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99348711 99348836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99348921 99349082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99349437 99349593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99349924 99350006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99350660 99351073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1347 nt):
ATGTCCGTTCGCTTTTCTTCCGCATCCAGACGGCTGGGCTCTGTGAGGCTCTCCAGCGCGGGAGCAGCCT
TGGGGGCTGGAAACGCATGCGGAGTGCCGGGCATCGGAAGCGGCTTCTCCTGCGCCTTTGGGGGCAGTTC
ATTGGCAGGGGGGCTCGGTATGGGCGGTGCTTCTTGTGGGGCCTTCACAGCGAATGAGCACGGCCTCCTC
TCCGGCAATGAGAAGGTCACCATGCAGAACCTTAATGACCGCCTGGCCTCCTACCTGGAGAACGTGCAAG
CACTGGAGGAGGCCAATGCTGACCTGGAGCAGAAGATCAAGGACTGGTATGAAAAATTTGGACCTGGGTC
GTGCCGCGGTCTCGATCATGACTACAGTAGATACTTCCCCATCATTGATGACCTCAGGACCCAGATCATC
TCTGCAACTGCACACAACGCCAACATCATCCTGCAAAATGACAACGCAAGACTGACGGCGGATGACTTCA
GAATGAAGTATGAGAATGAACTGGCACTCCACCAGAGCGTCGATGCTGACATCAATGGCTTGCGGAGGGT
CCTGGATGAGCTGACCCTGTGCAGAACCGACCTTGAGGTCCAGCTGGAAACACTCAGTGAGGAGCTGGCA
TACCTCAAGAAGAACCACGAGGAGGAAATGCAGGCTCTGCAGTGCGCCGCTGGAGGCAACGTGAACGTGG
AGATGAACGCAGCCCCGGGCGTGGACCTCACCGTCCTGCTGAACAACATGAGAGCCGAGTACGAGGCCCT
GGCTGAGCAGAACCGTAGGGACGCCGAGGCCTGGTTCCAAGAGAAGAGCGCCTCCCTGCAGCAGCAGATT
TCAGACGATGCTGGAGCCACCACCTCAGCCAGGAACGAACTTACAGAGATGAAACGGACTCTCCAAACCC
TGGAGATAGAGCTACAGTCCCTCTTAGCCATGAAACACTCTCTGGAGTGCTCCCTGACGGAGACCGAGGG
CAACTACTGCACGCAGCTGGCTCAGATCCAGGCTCAGATCAGCGCCCTGGAGGAGCAGCTGCACCAAGTG
AGGACGGAGACGGAGGGCCAGAAGCTGGAATATGAGCAGCTGCTGAATGTCAAGGCCCACCTGGAGAAGG
AGATCGAGACCTACTGCCGCCTCATAGATGGAGACGAGGGCTCTTGTGTTAAGGCAAAAGGCCAAGGAAG
ACCCGGAAATCAGACAAAAGATTCGCCTAAAACTGCCATCGTTAAAACTGTCGTGGAAGAGTTAGACCCC
CGTGGCAAGGTTCTCTCCTCCAGAGTTCACACCCTGGAAGAGAAATCCACCAAAGTCAACAAGACCGAGC
AGAGGATCCCTTCTTGA

Translation (448 aa):
MSVRFSSASRRLGSVRLSSAGAALGAGNACGVPGIGSGFSCAFGGSSLAGGLGMGGASCGAFTANEHGLL
SGNEKVTMQNLNDRLASYLENVQALEEANADLEQKIKDWYEKFGPGSCRGLDHDYSRYFPIIDDLRTQII
SATAHNANIILQNDNARLTADDFRMKYENELALHQSVDADINGLRRVLDELTLCRTDLEVQLETLSEELA
YLKKNHEEEMQALQCAAGGNVNVEMNAAPGVDLTVLLNNMRAEYEALAEQNRRDAEAWFQEKSASLQQQI
SDDAGATTSARNELTEMKRTLQTLEIELQSLLAMKHSLECSLTETEGNYCTQLAQIQAQISALEEQLHQV
RTETEGQKLEYEQLLNVKAHLEKEIETYCRLIDGDEGSCVKAKGQGRPGNQTKDSPKTAIVKTVVEELDP
RGKVLSSRVHTLEEKSTKVNKTEQRIPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH