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Report for CCDS25411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25411.1 Public Mus musculus 11 Krt19 23 108 98 CCDS HistoryNCBI Gene:16669Re-query CCDS DB by CCDS ID:25411.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25411.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007317.7 ENSMUSP00000007317.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007317.7Link to Ensembl Protein Viewer:ENSMUSP00000007317.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000007317Re-query CCDS DB by Protein ID:ENSMUSP00000007317
Original member Current member NCBI NM_008471.3 NP_032497.1 Accepted alive Link to Nucleotide Sequence:NM_008471.3Link to Protein Sequence:NP_032497.1Re-query CCDS DB by Nucleotide ID:NM_008471Re-query CCDS DB by Protein ID:NP_032497Link to BLAST:NP_032497.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032497.1 403 P19001 403 100% 0 0

Chromosomal Locations for CCDS 25411.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100140913 100141167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100141280 100141405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100141523 100141684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100142052 100142208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100142426 100142508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100145431 100145859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGACTTCCTATAGCTATCGCCAGACCTCAGCTATGTCTTCCTTTGGGGGTACGGGCGGGGGTTCAGTAC
GCATTGGGTCAGGGGGTGTTTTCCGCGCACCCAGCATCCACGGGGGCTCAGGTGGCCGCGGCGTGTCCGT
GTCCTCCACCCGCTTCGTGACCTCGTCCTCCGGGAGCTATGGCGGAGTCCGCGGTGGAAGTTTTAGTGGG
ACCCTGGCTGTGTCTGATGGGCTGCTGTCTGGCAATGAGAAGATCACCATGCAAAACCTCAATGATCGTC
TCGCCTCCTACTTGGACAAGGTGCGCGCCCTAGAGCAGGCCAATGGCGAGCTGGAGGTGAAGATCCGCGA
CTGGTACCAGAAGCAGGGACCCGGACCCTCCCGAGATTACAACCACTACTTTAAGACCATCGAGGACTTG
CGCGACAAGATTCTTGGTGCCACCATTGACAACTCCAAGATTGTCCTACAGATTGACAATGCTCGCCTGG
CTGCAGATGACTTCAGAACCAAGTTTGAGACAGAACACGCCTTGCGTCTGAGCGTGGAGGCCGACATCAA
CGGCCTGCGCCGGGTGCTGGATGAGCTGACTCTGGCCAGGACTGACCTGGAGATGCAGATTGAGAGCCTG
AAGGAGGAGCTGGCCTACCTGAAGAAGAACCATGAGGAGGAAATTACTGCCCTGAGGAGCCAGGTGGGTG
GCCAGGTCAGTGTGGAGGTGGATTCCACTCCCGGTGTCGACCTAGCCAAGATCCTGAGTGAGATGAGAAG
TCAGTATGAGATCATGGCCGAGAAGAACCGGAAGGATGCTGAAGCCACCTACCTTGCTCGGATTGAGGAG
CTGAACACCCAGGTCGCCGTCCACTCTGAGCAGATCCAGATAAGCAAGACCGAAGTCACGGACCTTCGAC
GGACCCTCCAGGGCCTTGAGATTGAGCTGCAGTCCCAGCTCAGCATGAAAGCTGCCCTGGAAGGCACGCT
GGCAGAGACGGAGGCCCGTTATGGAGTCCAGCTGTCACAGATCCAGAGCGTGATCAGCGGTTTTGAAGCC
CAGCTGAGCGACGTGCGTGCCGACATAGAGCGCCAGAACCAGGAGTATAAGCAGCTCATGGACATCAAGT
CCAGGCTGGAGCAGGAGATCGCCACCTACCGCAGCCTGCTGGAGGGCCAGGAAGCCCACTACAACAATCT
GCCCACCCCCAAGGCCATCTGA

Translation (403 aa):
MTSYSYRQTSAMSSFGGTGGGSVRIGSGGVFRAPSIHGGSGGRGVSVSSTRFVTSSSGSYGGVRGGSFSG
TLAVSDGLLSGNEKITMQNLNDRLASYLDKVRALEQANGELEVKIRDWYQKQGPGPSRDYNHYFKTIEDL
RDKILGATIDNSKIVLQIDNARLAADDFRTKFETEHALRLSVEADINGLRRVLDELTLARTDLEMQIESL
KEELAYLKKNHEEEITALRSQVGGQVSVEVDSTPGVDLAKILSEMRSQYEIMAEKNRKDAEATYLARIEE
LNTQVAVHSEQIQISKTEVTDLRRTLQGLEIELQSQLSMKAALEGTLAETEARYGVQLSQIQSVISGFEA
QLSDVRADIERQNQEYKQLMDIKSRLEQEIATYRSLLEGQEAHYNNLPTPKAI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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