NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS59018.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59018.2 Public Homo sapiens 6 TCP11 24 110 108 CCDS HistoryNCBI Gene:6954Re-query CCDS DB by CCDS ID:59018.2Re-query CCDS DB by GeneID:6954See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 59018.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000444780.7 ENSP00000404479.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000444780.7Link to Ensembl Protein Viewer:ENSP00000404479.3Re-query CCDS DB by Nucleotide ID:ENST00000444780Re-query CCDS DB by Protein ID:ENSP00000404479
Original member Current member NCBI NM_001261817.2 NP_001248746.2 Accepted alive Link to Nucleotide Sequence:NM_001261817.2Link to Protein Sequence:NP_001248746.2Re-query CCDS DB by Nucleotide ID:NM_001261817Re-query CCDS DB by Protein ID:NP_001248746Link to BLAST:NP_001248746.2

Chromosomal Locations for CCDS 59018.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 35118269 35118501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35119228 35119391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35120159 35120340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35120429 35120646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35120909 35121045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35122117 35122337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35129062 35129182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35136107 35136203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35140747 35140870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGCCAGACGTCAAGGAGAGTGTGCCCCCGAAATATCCTGGCGACTCAGAGGGCAGGTCCTGTAAGCCCG
AAACCTCAGGACCCCCCCAGGAAGACAAGAGCGGCTCCGAGGACCCCCCTCCCTGTCTGACAGAAACCGT
TAATGAAGTTTCCAAGCTGAGCAACAAGATTGGGATGAATTGTGATTACTACATGGAAGAGAAGGTTTTA
CCTCCAAGCAGTCTGGAAGGCAAGGTCAAGGAGACAGTGCACAATGCCTTTTGGGACCATCTTAAAGAGC
AACTATCAGCAACTCCCCCTGACTTCAGCTGTGCTCTTGAACTTCTGAAAGAAATTAAAGAGATCTTGCT
ATCACTGCTATTACCACGCCAGAACCGCCTGAGAATTGAGATTGAAGAAGCTCTGGACATGGACTTGCTC
AAGCAGGAGGCAGAACATGGGGCCCTGAAAGTCCTCTATCTCTCTAAGTACGTTCTCAACATGATGGCTT
TGCTGTGTGCACCAGTTCGAGATGAAGCAGTGCAGAAACTAGAAAACATTACGGATCCTGTTTGGCTACT
GAGAGGGATCTTCCAGGTTCTGGGCCGGATGAAAATGGACATGGTGAACTACACTATCCAGAGCCTTCAA
CCCCACCTGCAGGAACATTCCATTCAGTATGAACGGGCTAAATTCCAGGAACTCCTCAATAAGCAGCCTA
GTCTCCTTAATCACACCACCAAATGGCTGACCCAAGCAGCAGGAGACCTCACCATGTCACCTCCGACTTG
CCCAGACACTTCTGACTCCTCCAGTGTGGCTGGCCCCTCTCCCAATGAGGCAGCCAACAACCCAGAGCCC
CTCAGCCCCACAATGGTGCTGTGTCAGGGCTTCTTGAACCTCCTTCTCTGGGACCTTGAAAATGAAGAGT
TCCCTGAGACCCTGCTGATGGACAGAACCCGGCTGCAGGAGCTGAAGTCCCAGTTGCACCAGTTAACCGT
CATGGCCTCAGTCTTGCTGGTGGCCAGTAGTTTCTCCGGCAGTGTTTTGTTTGGCTCACCCCAATTTGTA
GATAAACTGAAACGCATAACCAAATCCTTGTTGGAAGACTTTCACTCCAGGCCTGAGGAAGCTATACTGA
CTGTGAGTGAACAGGTATCTCAGGAAATCCATCAAAGCCTCAAGAATATGGGCCTTGTTGCTCTAAGCAG
TGATAATACAGCATCTCTAATGGGACAGCTCCAGAACATTGCCAAGAAGGAGAACTGTGTCTGCAGTGTT
ATTGATCAGCGGATCCATTTGTTTCTCAAATGCTGTTTGGTTCTTGGTGTGCAGCGGTCTCTATTAGACC
TTCCTGGAGGCCTTACTCTCATTGAAGCAGAACTGGCAGAACTGGGCCAAAAGTTTGTCAACTTGACACA
TCACAATCAGCAGGTGTTTGGTCCCTACTACACTGAGATCCTAAAAACCCTCATTTCCCCAGCCCAGGCA
CTGGAAACAAAAGTGGAGTCTGTTTGA

Translation (498 aa):
MPDVKESVPPKYPGDSEGRSCKPETSGPPQEDKSGSEDPPPCLTETVNEVSKLSNKIGMNCDYYMEEKVL
PPSSLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELLKEIKEILLSLLLPRQNRLRIEIEEALDMDLL
KQEAEHGALKVLYLSKYVLNMMALLCAPVRDEAVQKLENITDPVWLLRGIFQVLGRMKMDMVNYTIQSLQ
PHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEP
LSPTMVLCQGFLNLLLWDLENEEFPETLLMDRTRLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFV
DKLKRITKSLLEDFHSRPEEAILTVSEQVSQEIHQSLKNMGLVALSSDNTASLMGQLQNIAKKENCVCSV
IDQRIHLFLKCCLVLGVQRSLLDLPGGLTLIEAELAELGQKFVNLTHHNQQVFGPYYTEILKTLISPAQA
LETKVESV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH