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Report for CCDS41238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41238.1 Public Homo sapiens 1 HES3 24 110 108 CCDS HistoryNCBI Gene:390992Re-query CCDS DB by CCDS ID:41238.1Re-query CCDS DB by GeneID:390992See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 41238.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377898.4 ENSP00000367130.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377898.4Link to Ensembl Protein Viewer:ENSP00000367130.3Re-query CCDS DB by Nucleotide ID:ENST00000377898Re-query CCDS DB by Protein ID:ENSP00000367130
Original member Current member NCBI NM_001024598.4 NP_001019769.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001024598.4Link to Protein Sequence:NP_001019769.1Re-query CCDS DB by Nucleotide ID:NM_001024598Re-query CCDS DB by Protein ID:NP_001019769Link to BLAST:NP_001019769.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019769.1 186 Q5TGS1 186 100% 0 0

Chromosomal Locations for CCDS 41238.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 6244366 6244446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6244548 6244629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6245110 6245507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGGAGAAAAAGCGCCGGGCACGCATCAATGTGTCACTGGAGCAGCTCAAGTCGCTGCTGGAGAAACACT
ACTCGCACCAGATCCGGAAGCGCAAATTGGAGAAGGCCGACATCCTGGAGTTGAGCGTGAAGTACATGAG
AAGCCTTCAGAACTCCTTGCAAGGGCTCTGGCCTGTGCCCAGGGGAGCCGAGCAACCGTCGGGCTTCCGC
AGCTGCCTGCCCGGCGTGAGCCAGCTCCTTCGGCGCGGAGATGAGGTCGGCAGCGGCCTGCGCTGCCCCC
TGGTGCCCGAGAGCGCCGCCGGCAGCACCATGGACAGCGCCGGGTTGGGCCAGGAGGCGCCCGCGCTGTT
CCGCCCTTGCACCCCTGCCGTCTGGGCTCCTGCTCCGGCCGCCGGCGGCCCGCGGTCCCCACCACCCCTG
CTCCTCCTCCCCGAAAGTCTCCCTGGCTCGTCCGCCAGCGTCCCCCCGCCGCAGCCAGCGTCGAGTCGCT
GCGCCGAGAGTCCCGGGCTGGGCCTGCGCGTGTGGCGGCCCTGGGGAAGCCCCGGGGATGACCTGAACTG
A

Translation (186 aa):
MEKKRRARINVSLEQLKSLLEKHYSHQIRKRKLEKADILELSVKYMRSLQNSLQGLWPVPRGAEQPSGFR
SCLPGVSQLLRRGDEVGSGLRCPLVPESAAGSTMDSAGLGQEAPALFRPCTPAVWAPAPAAGGPRSPPPL
LLLPESLPGSSASVPPPQPASSRCAESPGLGLRVWRPWGSPGDDLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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