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Report for CCDS17389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17389.1 Public Mus musculus 3 Lekr1 23 108 98 CCDS HistoryNCBI Gene:624866Re-query CCDS DB by CCDS ID:17389.1Re-query CCDS DB by GeneID:624866See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17389.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099075.3 ENSMUSP00000096674.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099075.3Link to Ensembl Protein Viewer:ENSMUSP00000096674.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099075Re-query CCDS DB by Protein ID:ENSMUSP00000096674
Original member Current member NCBI NM_001037923.4 NP_001033012.2 Accepted alive Link to Nucleotide Sequence:NM_001037923.4Link to Protein Sequence:NP_001033012.2Re-query CCDS DB by Nucleotide ID:NM_001037923Re-query CCDS DB by Protein ID:NP_001033012Link to BLAST:NP_001033012.2

Chromosomal Locations for CCDS 17389.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 65669131 65669178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 65683892 65684194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (351 nt):
ATGGATCGTCACATTCCCATGCATGCCTTACCTGAAGAAATCCAAAAGATGTCTCCTGAAGAAACAGTTT
GTAAATACTGTGGCGTCAGCTATCTAATTCTTCATGAATTTAAGGCTATGGAAGAAAAACTGAAAGCAGT
GCAAGAAGAAATGAAATTTTATCAAGGAAGTGTAGAACGTGAAAAGAAACTTCAAGAAAAGCTGCAGTCT
CTTAGCCAGGAGTTTGAACAGTATAAAAGTGACAGCGAGTCCAAGAAGGCAAGGTCGGAGTATGTTTCCT
GTCTCTTATTTAGTTTCAAGGCAAACAGTAGATTTGGGTGGCATGGTGGTACATGCCTGAAATTCCAGTA
G

Translation (116 aa):
MDRHIPMHALPEEIQKMSPEETVCKYCGVSYLILHEFKAMEEKLKAVQEEMKFYQGSVEREKKLQEKLQS
LSQEFEQYKSDSESKKARSEYVSCLLFSFKANSRFGWHGGTCLKFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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