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Report for CCDS53147.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53147.1 Public Mus musculus X Dgat2l6 23 108 98 CCDS HistoryNCBI Gene:668257Re-query CCDS DB by CCDS ID:53147.1Re-query CCDS DB by GeneID:668257See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53147.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037541.8 ENSMUSP00000036845.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037541.8Link to Ensembl Protein Viewer:ENSMUSP00000036845.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000037541Re-query CCDS DB by Protein ID:ENSMUSP00000036845
Original member Current member NCBI NM_001114084.1 NP_001107556.1 Accepted alive Link to Nucleotide Sequence:NM_001114084.1Link to Protein Sequence:NP_001107556.1Re-query CCDS DB by Nucleotide ID:NM_001114084Re-query CCDS DB by Protein ID:NP_001107556Link to BLAST:NP_001107556.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107556.1 337 A2ADU8 337 100% 0 0

Chromosomal Locations for CCDS 53147.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 100524923 100525007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100540003 100540113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100540637 100540707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100541068 100541272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100542616 100542790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100544796 100545007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100545446 100545600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGGCCGCTTTCTCCTGTCTAGATCTGCAGGAAGGCCTCCGAACACTCTCCATCTTACAGTGGATTCCAG
TTTATGTACTTTTAGGAACTCTTTCCATCTTGGGCATGCCCTATCTCCTGCTGTTCACTACCTTATGGCC
CTTGTCTGTGCTCTTCTTAGTCTGGATTGCCTATGATTGGAACACCCACATTCAAGATGGTAGGCGTTCA
GCTTGGGTACGAAACTGGACCCTGTGGAAGTATTTCCAAAGCTACTTTCCAGTAAAGCTGGTGAAGACCC
ATGACCTTTCTCCCAAACACAACTACATCATTCTCAGCCACCCCCATGGCATTCTCAGTTATGGTGCCTT
CATCAACTTTGCTACTGAGTCCACTGGCTTTTCCAGGGTTTTCCCTTCTATAACTCCCTTTTTAGCAACC
TTGGAAGGGATCTTCTGGATCCCATTTGTGCGAGACTATCTGATGTCCTTGGGTATTTGTCCAGTGAGTA
AGTTGTCTCTGACGCACAAGCTGACCCAGAAAGACTCAGGCAATGCTGTGATCATTGTGCCGGGTGGAGC
TTCTGAATCGCTCTTGAGCCGCCCAGGAGTCTCCATGATCTACCTCAAAAAACGCCAAGGTTTTGTGAAG
CTAGCACTGAAGACAGGAGCATATCTTGTCCCTTCTTATTCCTTTGGTGAGAATGAGACTTACAACCAAG
AGACCTTTGCTGAAGGCACATGGCTAAGGTTCTTCCAAAAAAACATCCAGAAAATTGGCAAAAGAATTCT
AGGCATAAATTTATGTACTATTCATGGCAGAGGCCTCACTAGGGGATCCTGGGGCTTTTTGCCTTTCAAC
CATCCTATTACCACTGTTGTTGGAGAACCCTTGCCAGTCCCCAAGATCCCTGATCCCGACAAGGAGACCG
TGGAAAAGTACCTTGAACTTTACATCAGTGCCCTACGCAAGCTGTTTGACCAACACAAAGCTGAATATGG
CCTCTCCAAGACCCACGAGCTGAAAATTTTATGA

Translation (337 aa):
MAAFSCLDLQEGLRTLSILQWIPVYVLLGTLSILGMPYLLLFTTLWPLSVLFLVWIAYDWNTHIQDGRRS
AWVRNWTLWKYFQSYFPVKLVKTHDLSPKHNYIILSHPHGILSYGAFINFATESTGFSRVFPSITPFLAT
LEGIFWIPFVRDYLMSLGICPVSKLSLTHKLTQKDSGNAVIIVPGGASESLLSRPGVSMIYLKKRQGFVK
LALKTGAYLVPSYSFGENETYNQETFAEGTWLRFFQKNIQKIGKRILGINLCTIHGRGLTRGSWGFLPFN
HPITTVVGEPLPVPKIPDPDKETVEKYLELYISALRKLFDQHKAEYGLSKTHELKIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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