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Report for CCDS19301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19301.1 Public Mus musculus 5 Klf3 23 108 98 CCDS HistoryNCBI Gene:16599Re-query CCDS DB by CCDS ID:19301.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19301.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166409.5 ENSMUSP00000128429.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166409.5Link to Ensembl Protein Viewer:ENSMUSP00000128429.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166409Re-query CCDS DB by Protein ID:ENSMUSP00000128429
Original member Current member EBI ENSMUST00000165536.7 ENSMUSP00000129363.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165536.7Link to Ensembl Protein Viewer:ENSMUSP00000129363.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165536Re-query CCDS DB by Protein ID:ENSMUSP00000129363
Original member NCBI NM_008453.5 NP_032479.1 Updated not alive Link to Nucleotide Sequence:NM_008453.5Link to Protein Sequence:NP_032479.1Re-query CCDS DB by Nucleotide ID:NM_008453Re-query CCDS DB by Protein ID:NP_032479
Current member NCBI NM_008453.6 NP_032479.1 Accepted alive Link to Nucleotide Sequence:NM_008453.6Link to Protein Sequence:NP_032479.1Re-query CCDS DB by Nucleotide ID:NM_008453Re-query CCDS DB by Protein ID:NP_032479Link to BLAST:NP_032479.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032479.1 344 Q60980 344 100% 0 0

Chromosomal Locations for CCDS 19301.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 64816774 64816830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64821874 64822357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64822879 64823029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64827110 64827270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64828977 64829158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGCTCATGTTTGATCCAGTCCCTGTCAAGCAGGAGGCCATGGACCCTGTCTCGGTGTCCTTCCCGTCGA
ATTACATAGAATCGATGAAGCCCAACAAATATGGGGTCATTTACTCCACACCGTTGCCTGATAAGTTCTT
CCAGACCCCAGAAGGCCTCACTCACGGGATACAGGTGGAGCCGGTGGACCTCACGGTGAACAAGCGGGGC
TCCCCGCCTGCTGCGGGCGGTTCTCCTTCCTCTCTGAAGTTCCCGTCCCACCGGAGAGCGTCACCTGGCC
TCAGCATGCCCTCCTCCAGTCCGCCCATTAAGAAGTACTCGCCCCCTTCTCCTGGCGTGCAGCCCTTTGG
AGTACCCCTGTCTATGCCGCCTGTGATGGCAGCCGCGCTGTCCAGACACGGAATCCGGAGCCCAGGCATC
CTCCCCGTCATTCAGCCCGTCGTGGTCCAGCCCGTTCCTTTTATGTATACCAGCCACCTGCAGCAGCCTC
TCATGGTTTCCTTGTCGGAAGAGATGGACAATTCAAACAGCGGCATGCCAGTACCTGTAATTGAATCATA
TGAGAAGCCCTTATTACAGAAAAAAATTAAAATAGAGCCTGGAATTGAACCACAGAGGACTGACTATTAC
CCTGAAGAAATGTCACCCCCTTTAATGAACCCAGTGTCCCCCCCGCAAGCCTTGTTGCAAGAGAACCATC
CTTCCGTCATCGTGCAGCCTGGGAAGAGACCTCTACCTGTGGAATCCCCGGATACCCAAAGGAAGCGCAG
GATACACAGATGCGACTATGATGGGTGCAATAAGGTCTACACTAAGAGCTCGCACTTGAAAGCACACAGA
AGAACTCATACAGGAGAAAAGCCGTACAAATGCACCTGGGAAGGCTGCACGTGGAAGTTCGCTCGGTCTG
ATGAACTGACGAGACATTTCCGAAAACACACTGGGATCAAACCTTTCCAGTGTCCAGACTGTGACCGAAG
CTTCTCTCGCTCTGACCACCTTGCCCTACACAGGAAACGCCACATGCTAGTCTGA

Translation (344 aa):
MLMFDPVPVKQEAMDPVSVSFPSNYIESMKPNKYGVIYSTPLPDKFFQTPEGLTHGIQVEPVDLTVNKRG
SPPAAGGSPSSLKFPSHRRASPGLSMPSSSPPIKKYSPPSPGVQPFGVPLSMPPVMAAALSRHGIRSPGI
LPVIQPVVVQPVPFMYTSHLQQPLMVSLSEEMDNSNSGMPVPVIESYEKPLLQKKIKIEPGIEPQRTDYY
PEEMSPPLMNPVSPPQALLQENHPSVIVQPGKRPLPVESPDTQRKRRIHRCDYDGCNKVYTKSSHLKAHR
RTHTGEKPYKCTWEGCTWKFARSDELTRHFRKHTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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