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Report for CCDS37365.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37365.1 Public Mus musculus 16 Cmss1 23 108 98 CCDS HistoryNCBI Gene:66497Re-query CCDS DB by CCDS ID:37365.1Re-query CCDS DB by GeneID:66497See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37365.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114371.4 ENSMUSP00000110011.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114371.4Link to Ensembl Protein Viewer:ENSMUSP00000110011.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114371Re-query CCDS DB by Protein ID:ENSMUSP00000110011
Original member Current member NCBI NM_025599.3 NP_079875.2 Accepted alive Link to Nucleotide Sequence:NM_025599.3Link to Protein Sequence:NP_079875.2Re-query CCDS DB by Nucleotide ID:NM_025599Re-query CCDS DB by Protein ID:NP_079875Link to BLAST:NP_079875.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079875.2 276 Q9CZT6 276 100% 0 0

Chromosomal Locations for CCDS 37365.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 57302199 57302282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57303680 57303768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57306826 57306913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57307369 57307429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57311253 57311355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57312658 57312717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57316162 57316291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57317906 57317980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57323464 57323543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57606666 57606726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGGCAGACGATCTGGGAGACGAGTGGTGGGAGAACCAGCCGGCAGCCGCCAGCAGCCCAGAGCAATCAG
GTGGTGAGGAAGGAGGGGACACGGAAATGACACAGCAGGACACAGCTCCGGTTCCTGAGAAAACCCAACA
GCCCACTGAGTGTTTCCTGACACAAACAAAGGAACCCAAAGCAGAGGACTCTCGGAAGACCAGGAAGTGG
AAGAAGAAGAAAATTTCTGATATTCTTGCAAAATCAGAGCCCAAACCAGGGACCCCTGAGGACCTTCAGA
AGCTGATCAGAGACCATTACAGCAGCAGCCGTTCCGTGATAGAATTAGAAGAACTGCACCTACCAGACTC
CTGCTTCCTCAAGGCCAATGATTTGACTCACAGTCTCTCTTCATACCTAAAAGAAATCTGTCCTAAGTGG
GTAAAACTTCGGAAAACCCACAACGAGAAGAAGTCGGTCCTGATGCTGATCCTCTGCAGCTCCGCTGTGC
GAGCCCTGGAGCTCATCAGGTCTCTGACAGCATTCAAAGGAGATGCCAAAGTTATGAAATTATTTGCAAA
ACATATAAAGGTCCAGGAACAGGTAAAGTTGCTGGAGAAGCGTGTGATACACCTGGGTGTGGGGACTCCG
GGGAGAATCAAAGAACTTGTCAAACAAGATGGCCTCCATTTGAACCCCTTAAAGTTTCTGGTGTTCGACT
GGAACTGGAGAGATCAGAAGCTGAGGAGAATGATGGACATTCCCGAGATAAGAAAGGAGGTTTTCGAGCT
TCTAGATATGGGAGTGTTCAGCCTGTGCAAGTCGGACTCCTTGAAGCTGGGTCTTTTCTAA

Translation (276 aa):
MADDLGDEWWENQPAAASSPEQSGGEEGGDTEMTQQDTAPVPEKTQQPTECFLTQTKEPKAEDSRKTRKW
KKKKISDILAKSEPKPGTPEDLQKLIRDHYSSSRSVIELEELHLPDSCFLKANDLTHSLSSYLKEICPKW
VKLRKTHNEKKSVLMLILCSSAVRALELIRSLTAFKGDAKVMKLFAKHIKVQEQVKLLEKRVIHLGVGTP
GRIKELVKQDGLHLNPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFELLDMGVFSLCKSDSLKLGLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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