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Report for CCDS254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
254.1 Public Homo sapiens 1 RCAN3 24 110 108 CCDS HistoryNCBI Gene:11123Re-query CCDS DB by CCDS ID:254.1Re-query CCDS DB by GeneID:11123See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 254.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374395.9 ENSP00000363516.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374395.9Link to Ensembl Protein Viewer:ENSP00000363516.3Re-query CCDS DB by Nucleotide ID:ENST00000374395Re-query CCDS DB by Protein ID:ENSP00000363516
Original member Current member EBI ENST00000538532.6 ENSP00000445401.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538532.6Link to Ensembl Protein Viewer:ENSP00000445401.2Re-query CCDS DB by Nucleotide ID:ENST00000538532Re-query CCDS DB by Protein ID:ENSP00000445401
Original member Current member NCBI NM_001251977.2 NP_001238906.1 Accepted alive Link to Nucleotide Sequence:NM_001251977.2Link to Protein Sequence:NP_001238906.1Re-query CCDS DB by Nucleotide ID:NM_001251977Re-query CCDS DB by Protein ID:NP_001238906Link to BLAST:NP_001238906.1
Original member Current member NCBI NM_001251978.1 NP_001238907.1 Accepted alive Link to Nucleotide Sequence:NM_001251978.1Link to Protein Sequence:NP_001238907.1Re-query CCDS DB by Nucleotide ID:NM_001251978Re-query CCDS DB by Protein ID:NP_001238907Link to BLAST:NP_001238907.1
Original member Current member NCBI NM_001251979.2 NP_001238908.1 Accepted alive Link to Nucleotide Sequence:NM_001251979.2Link to Protein Sequence:NP_001238908.1Re-query CCDS DB by Nucleotide ID:NM_001251979Re-query CCDS DB by Protein ID:NP_001238908Link to BLAST:NP_001238908.1
Original member Current member NCBI NM_013441.4 NP_038469.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013441.4Link to Protein Sequence:NP_038469.1Re-query CCDS DB by Nucleotide ID:NM_013441Re-query CCDS DB by Protein ID:NP_038469Link to BLAST:NP_038469.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001238906.1 241 Q9UKA8-1 241 100% 0 0
NP_001238907.1 241 Q9UKA8-1 241 100% 0 0
NP_001238908.1 241 Q9UKA8-1 241 100% 0 0
NP_038469.1 241 Q9UKA8-1 241 100% 0 0

Chromosomal Locations for CCDS 254.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 24514373 24514567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24531218 24531391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24533083 24533254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24535093 24535277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGCTGAGGGACACTATGAAATCTTGGAATGATAGCCAGTCAGATCTGTGTAGCACTGACCAAGAAGAGG
AAGAAGAGATGATTTTTGGTGAAAATGAAGATGATTTGGATGAGATGATGGATTTAAGTGATCTGCCTAC
CTCACTTTTTGCTTGCAGCGTCCATGAAGCAGTGTTTGAGGCACGAGAGCAGAAGGAAAGATTTGAAGCA
CTCTTCACCATCTATGATGACCAGGTTACTTTTCAGCTGTTTAAAAGCTTTAGAAGAGTCAGAATAAATT
TCAGCAAACCTGAAGCGGCAGCAAGAGCGCGAATAGAACTCCACGAAACAGACTTCAATGGGCAGAAGCT
AAAGCTATATTTTGCACAGGTGCAGATGTCCGGCGAAGTGCGGGACAAGTCCTATCTCCTGCCGCCCCAG
CCTGTCAAGCAGTTCCTCATCTCCCCTCCAGCCTCTCCCCCGGTGGGGTGGAAGCAGAGCGAAGATGCGA
TGCCTGTTATAAATTATGATTTACTCTGTGCTGTTTCCAAATTGGGACCAGGAGAGAAATATGAACTTCA
CGCGGGAACAGAGTCGACACCCAGCGTGGTGGTTCATGTCTGTGAAAGTGAAACTGAAGAGGAAGAAGAG
ACAAAAAACCCCAAACAGAAAATTGCCCAGACGAGGCGCCCCGACCCTCCGACCGCAGCGTTGAATGAGC
CCCAGACCTTTGATTGCGCGCTGTGA

Translation (241 aa):
MLRDTMKSWNDSQSDLCSTDQEEEEEMIFGENEDDLDEMMDLSDLPTSLFACSVHEAVFEAREQKERFEA
LFTIYDDQVTFQLFKSFRRVRINFSKPEAAARARIELHETDFNGQKLKLYFAQVQMSGEVRDKSYLLPPQ
PVKQFLISPPASPPVGWKQSEDAMPVINYDLLCAVSKLGPGEKYELHAGTESTPSVVVHVCESETEEEEE
TKNPKQKIAQTRRPDPPTAALNEPQTFDCAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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