NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5545.1 Public Homo sapiens 7 TRIM74 24 110 108 CCDS HistoryNCBI Gene:378108Re-query CCDS DB by CCDS ID:5545.1Re-query CCDS DB by GeneID:378108See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5545.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000285805.3 ENSP00000285805.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000285805.3Link to Ensembl Protein Viewer:ENSP00000285805.3Re-query CCDS DB by Nucleotide ID:ENST00000285805Re-query CCDS DB by Protein ID:ENSP00000285805
Original member Current member NCBI NM_001317815.2 NP_001304744.1 Accepted alive Link to Nucleotide Sequence:NM_001317815.2Link to Protein Sequence:NP_001304744.1Re-query CCDS DB by Nucleotide ID:NM_001317815Re-query CCDS DB by Protein ID:NP_001304744Link to BLAST:NP_001304744.1
Original member Current member NCBI NM_198853.3 NP_942150.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198853.3Link to Protein Sequence:NP_942150.1Re-query CCDS DB by Nucleotide ID:NM_198853Re-query CCDS DB by Protein ID:NP_942150Link to BLAST:NP_942150.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304744.1 250 Q86UV6-1 250 100% 0 0
NP_942150.1 250 Q86UV6-1 250 100% 0 0

Chromosomal Locations for CCDS 5545.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 72959882 72959908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72960021 72960251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72961350 72961445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 72965759 72966157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGGCTTGGCAGGTGAGCCTGCTGGAGCTGGAGGACTGGCTTCAGTGTCCCATCTGCCTGGAGGTCTTCA
AGGAGTCCCTAATGCTACAGTGCGGCCACTCCTACTGCAAGGGCTGCCTGGTTTCCCTGTCCTACCACCT
GGACACCAAGGTGCGCTGCCCCATGTGCTGGCAGGTGGTGGACGGCAGCAGCTCCTTGCCCAACGTCTCC
CTGGCCTGGGTGATCGAAGCCCTGAGGCTCCCTGGGGACCCGGAGCCCAAGGTCTGCGTGCACCACCGGA
ACCCGCTCAGCCTTTTCTGCGAGAAGGACCAGGAGCTCATCTGTGGCCTCTGCGGTCTGCTGGGCTCCCA
CCAACACCACCCGGTCACGCCCGTCTCCACCGTCTGCAGCCGCATGAAGGAGGAGCTCGCAGCCCTCTTC
TCTGAGCTGAAGCAGGAGCAGAAGAAGGTGGATGAGCTCATCGCCAAACTGGTGAAAAACCGGACCCGAA
TCGTCAATGAGTCGGATGTCTTCAGCTGGGTGATCCGCCGCGAGTTCCAGGAGCTGCGCCACCCGGTGGA
CGAGGAGAAGGCCCGCTGCCTGGAGGGGATAGGGGGTCACACCCGTGGCCTGGTGGCCTCCCTGGACATG
CAGCTGGAGCAGGCCCAGGGAACCCGGGAGCGGCTGGCCCAAGCCGAGTGTGTGCTGGAACAGTTCGGAA
ATGAGGACCACCATGAGTTCATCTGGAAGTTCCACTCCATGGCCTCCAGGTAA

Translation (250 aa):
MAWQVSLLELEDWLQCPICLEVFKESLMLQCGHSYCKGCLVSLSYHLDTKVRCPMCWQVVDGSSSLPNVS
LAWVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHHPVTPVSTVCSRMKEELAALF
SELKQEQKKVDELIAKLVKNRTRIVNESDVFSWVIRREFQELRHPVDEEKARCLEGIGGHTRGLVASLDM
QLEQAQGTRERLAQAECVLEQFGNEDHHEFIWKFHSMASR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH