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Report for CCDS9573.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9573.2 Public Homo sapiens 14 OXA1L 24 110 108 CCDS HistoryNCBI Gene:5018Re-query CCDS DB by CCDS ID:9573.2Re-query CCDS DB by GeneID:5018See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 9573.1
The coding region has been updated to shorten the N-terminus to one that is more supported by available conservation data or publications.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9573.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000612549.6 ENSP00000483491.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000612549.6Link to Ensembl Protein Viewer:ENSP00000483491.2Re-query CCDS DB by Nucleotide ID:ENST00000612549Re-query CCDS DB by Protein ID:ENSP00000483491
Original member Current member NCBI NM_005015.5 NP_005006.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005015.5Link to Protein Sequence:NP_005006.4Re-query CCDS DB by Nucleotide ID:NM_005015Re-query CCDS DB by Protein ID:NP_005006Link to BLAST:NP_005006.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005006.4 435 Q15070-1 435 100% 0 0

Chromosomal Locations for CCDS 9573.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 22766702 22766764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22767248 22767409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22767958 22768171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22769791 22769934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22770193 22770278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22770461 22770625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22770805 22770909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22771018 22771180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22771268 22771348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 22771434 22771558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGGCGATGGGACTAATGTGCGGACGCCGGGAGCTTCTGCGCTTGCTACAGTCCGGGCGTCGGGTCCACA
GC
GTCGCAGGGCCCTCGCAATGGCTTGGGAAACCGCTGACCACACGGCTCCTATTCCCAGCAGCCCCGTG
C
TGCTGTCGCCCACACTACCTCTTCCTTGCGGCTTCCGGCCCCCGCAGCCTCAGTACCTCTGCTATCTCT
TTT
GCAGAAGTCCAGGTTCAGGCCCCTCCTGTTGTTGCTGCAACTCCCTCACCCACAGCAGTACCTGAGG
TG
GCTTCTGGAGAGACTGCAGATGTAGTCCAAACTGCTGCAGAGCAGAGCTTCGCTGAACTGGGGCTGGG
G
TCATACACCCCAGTGGGACTGATCCAGAATTTACTGGAATTTATGCATGTTGATCTGGGCCTACCTTGG
TGG
GGGGCCATTGCTGCATGTACAGTCTTTGCCCGCTGCCTGATTTTTCCTCTCATCGTGACGGGCCAGC
GA
GAGGCAGCCAGGATCCACAATCACTTGCCAGAGATCCAGAAGTTTTCCAGTCGAATCAGAGAGGCCAA
G
TTAGCAGGAGACCATATTGAGTATTACAAGGCTTCCTCGGAGATGGCACTTTACCAGAAAAAACATGGT
ATT
AAACTCTATAAACCTCTCATTCTCCCTGTGACTCAGGCCCCAATCTTCATCTCCTTCTTCATTGCTT
TG
AGAGAGATGGCCAACCTTCCTGTGCCCAGCCTGCAGACAGGTGGCCTCTGGTGGTTCCAGGATCTCAC
G
GTATCCGATCCCATCTACATATTACCACTGGCAGTCACTGCTACAATGTGGGCTGTTCTTGAGCTAGGT
GCT
GAGACAGGTGTGCAAAGTTCTGACCTTCAGTGGATGAGAAATGTCATCAGAATGATGCCCCTGATAA
CC
TTGCCCATAACCATGCATTTCCCCACGGCAGTGTTTATGTACTGGCTCTCCTCCAATTTGTTTTCCCT
G
GTCCAAGTATCCTGTCTCCGGATTCCAGCAGTACGCACTGTACTTAAAATCCCCCAGCGTGTTGTACAT
GAC
CTGGACAAATTACCTCCACGGGAAGGCTTCCTAGAGAGCTTCAAAAAAGGCTGGAAAAATGCTGAAA
TG
ACGCGTCAGCTGCGAGAGCGTGAACAACGCATGCGGAATCAGTTGGAGCTAGCAGCCAGGGGTCCTTT
A
CGACAGACCTTTACCCACAACCCTCTCCTACAACCTGGAAAGGATAACCCTCCCAATATCCCTAGCAGC
AGC
AGCAAACCAAAGTCAAAGTATCCCTGGCACGACACACTTGGCTGA


Translation (435 aa):
MAMGLMCGRRELLRLLQSGRRVHSVAGPSQWLGKPLTTRLLFPAAPCCCRPHYLFLAASGPRSLSTSAIS
F
AEVQ
VQAPPVVAATPSPTAVPEVASGETADVVQTAAEQSFAELGLGSYTPVGLIQNLLEFMHVDLGLPW
W
GAIAA
CTVFARCLIFPLIVTGQREAARIHNHLPEIQKFSSRIREAKLAGDHIEYYKASSEMALYQKKHG
I
KLYKPLILPVTQ
APIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSDPIYILPLAVTATMWAVLELG
A
ETGVQSSDLQWMRNVIRMMPLITLPITMHFPT
AVFMYWLSSNLFSLVQVSCLRIPAVRTVLKIPQRVVH
D
LDKLPPREGFLESFKK
GWKNAEMTRQLREREQRMRNQLELAARGPLRQTFTHNPLLQPGKDNPPNIPSS
S
SKPKSKYPWHDTLG




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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