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Report for CCDS3782.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3782.1 Public Homo sapiens 4 MND1 24 110 108 CCDS HistoryNCBI Gene:84057Re-query CCDS DB by CCDS ID:3782.1Re-query CCDS DB by GeneID:84057See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3782.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000240488.8 ENSP00000240488.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000240488.8Link to Ensembl Protein Viewer:ENSP00000240488.3Re-query CCDS DB by Nucleotide ID:ENST00000240488Re-query CCDS DB by Protein ID:ENSP00000240488
Original member Current member NCBI NM_032117.4 NP_115493.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032117.4Link to Protein Sequence:NP_115493.1Re-query CCDS DB by Nucleotide ID:NM_032117Re-query CCDS DB by Protein ID:NP_115493Link to BLAST:NP_115493.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115493.1 205 Q9BWT6 205 100% 0 0

Chromosomal Locations for CCDS 3782.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 153344738 153344740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153350064 153350129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153355654 153355711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153358474 153358622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153394262 153394336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153397219 153397333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153408971 153409015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153414751 153414857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGTCAAAGAAAAAAGGACTGAGTGCAGAAGAAAAGAGAACTCGCATGATGGAAATATTTTCTGAAACAA
AAGATGTATTTCAATTAAAAGACTTGGAGAAGATTGCTCCCAAAGAGAAAGGCATTACTGCTATGTCAGT
AAAAGAAGTCCTTCAAAGCTTAGTTGATGATGGTATGGTTGACTGTGAGAGGATCGGAACTTCTAATTAT
TATTGGGCTTTTCCAAGTAAAGCTCTTCATGCAAGGAAACATAAGTTGGAGGTTCTGGAATCTCAGTTGT
CTGAGGGAAGTCAAAAGCATGCAAGCCTACAGAAAAGCATTGAGAAAGCTAAAATTGGCCGATGTGAAAC
GGAAGAGCGAACCAGGCTAGCAAAAGAGCTTTCTTCACTTCGAGACCAAAGGGAACAGCTAAAGGCAGAA
GTAGAAAAATACAAAGACTGTGATCCGCAAGTTGTGGAAGAAATACGCCAAGCAAATAAAGTAGCCAAAG
AAGCTGCTAACAGATGGACTGATAACATATTCGCAATAAAATCTTGGGCCAAAAGAAAATTTGGGTTTGA
AGAAAATAAAATTGATAGAACTTTTGGAATTCCAGAAGACTTTGACTACATAGACTAA

Translation (205 aa):
MSKKKGLSAEEKRTRMMEIFSETKDVFQLKDLEKIAPKEKGITAMSVKEVLQSLVDDGMVDCERIGTSNY
YWAFPSKALHARKHKLEVLESQLSEGSQKHASLQKSIEKAKIGRCETEERTRLAKELSSLRDQREQLKAE
VEKYKDCDPQVVEEIRQANKVAKEAANRWTDNIFAIKSWAKRKFGFEENKIDRTFGIPEDFDYID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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