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Report for CCDS5448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5448.1 Public Homo sapiens 7 AOAH 24 110 108 CCDS HistoryNCBI Gene:313Re-query CCDS DB by CCDS ID:5448.1Re-query CCDS DB by GeneID:313See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5448.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000617537.5 ENSP00000483783.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000617537.5Link to Ensembl Protein Viewer:ENSP00000483783.1Re-query CCDS DB by Nucleotide ID:ENST00000617537Re-query CCDS DB by Protein ID:ENSP00000483783
Original member Current member NCBI NM_001637.4 NP_001628.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001637.4Link to Protein Sequence:NP_001628.1Re-query CCDS DB by Nucleotide ID:NM_001637Re-query CCDS DB by Protein ID:NP_001628Link to BLAST:NP_001628.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001628.1 575 P28039-1 575 100% 0 0

Chromosomal Locations for CCDS 5448.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 36513252 36513380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36522039 36522115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36530418 36530514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36532147 36532206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36532286 36532344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36540319 36540491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36548612 36548686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36549439 36549475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36576574 36576656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36594339 36594430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36616380 36616474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36618297 36618345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36620781 36620829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36621710 36621780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36623190 36623250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36632036 36632106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36637851 36637910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36659166 36659265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36673943 36674009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36686699 36686794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36724022 36724148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1728 nt):
ATGCAGTCCCCCTGGAAAATCCTTACGGTGGCGCCTCTATTCTTGCTCCTGTCTCTTCAGTCCTCGGCCT
CTCCAGCCAACGATGACCAGTCCAGGCCCAGCCTCTCGAATGGGCACACCTGTGTAGGGTGTGTGCTGGT
GGTGTCTGTAATAGAACAGCTTGCTCAAGTTCACAACTCGACGGTCCAGGCCTCGATGGAGAGACTGTGC
AGCTACCTGCCTGAAAAACTGTTCTTGAAAACCACCTGCTATTTAGTCATTGACAAGTTTGGATCAGACA
TCATAAAACTGCTTAGCGCAGATATGAATGCTGATGTGGTATGTCACACTCTGGAGTTTTGTAAACAGAA
CACTGGCCAACCATTGTGTCATCTCTACCCTCTTCCCAAGGAGACATGGAAATTTACACTACAGAAGGCA
AGACAAATTGTCAAGAAGTCCCCGATTCTGAAATATTCTAGAAGTGGTTCTGACATTTGTTCACTCCCGG
TTTTGGCCAAGATCTGCCAGAAAATTAAATTAGCTATGGAACAGTCTGTGCCATTCAAAGATGTGGATTC
AGACAAATACAGCGTTTTCCCAACACTGCGGGGCTATCACTGGCGGGGGAGAGACTGTAATGACAGCGAC
GAGTCAGTGTACCCAGGTAGAAGGCCGAACAACTGGGATGTCCATCAGGATTCAAACTGTAATGGCATTT
GGGGTGTCGATCCAAAAGATGGAGTTCCATATGAGAAGAAATTCTGTGAAGGTTCACAGCCCAGGGGAAT
CATTTTGCTGGGAGACTCAGCTGGGGCTCATTTTCACATCTCTCCTGAATGGATCACAGCGTCGCAGATG
TCTTTGAACTCTTTCATCAATCTACCAACAGCCCTTACCAACGAGCTTGACTGGCCCCAACTCTCTGGTG
CTACAGGATTTCTGGACTCCACTGTTGGAATTAAAGAAAAATCTATTTACCTTCGCTTATGGAAAAGAAA
CCACTGTAATCACAGGGACTACCAGAATATTTCAAGAAATGGTGCATCTTCCCGAAACCTGAAGAAATTT
ATAGAAAGCTTGTCTAGAAACAAGGTGTTGGACTATCCCGCCATCGTTATATATGCCATGATTGGAAATG
ATGTCTGCAGTGGGAAGAGTGACCCAGTCCCAGCCATGACCACTCCTGAGAAACTCTACTCCAACGTCAT
GCAGACTCTGAAGCATCTAAATTCCCACCTGCCCAATGGCAGCCATGTTATTTTGTATGGCTTACCAGAT
GGAACCTTTCTCTGGGATAATTTGCACAACAGATATCATCCTCTCGGCCAGCTAAATAAAGACATGACCT
ATGCGCAGTTGTACTCCTTCCTGAACTGCCTCCAGGTCAGCCCCTGCCACGGCTGGATGTCTTCCAACAA
GACGTTGCGGACTCTCACTTCAGAGAGAGCAGAGCAACTCTCCAACACACTGAAAAAAATTGCAGCCAGT
GAGAAATTTACAAACTTCAATCTTTTCTACATGGATTTTGCCTTCCATGAAATCATACAGGAGTGGCAGA
AGAGAGGCGGACAGCCCTGGCAGCTCATCGAGCCCGTGGATGGATTCCACCCCAACGAGGTGGCTTTGCT
GTTGTTGGCGGATCATTTCTGGAAAAAGGTGCAGCTCCAGTGGCCCCAAATCCTGGGAAAGGAGAATCCG
TTCAACCCCCAGATTAAACAGGTGTTTGGAGACCAAGGCGGGCACTGA

Translation (575 aa):
MQSPWKILTVAPLFLLLSLQSSASPANDDQSRPSLSNGHTCVGCVLVVSVIEQLAQVHNSTVQASMERLC
SYLPEKLFLKTTCYLVIDKFGSDIIKLLSADMNADVVCHTLEFCKQNTGQPLCHLYPLPKETWKFTLQKA
RQIVKKSPILKYSRSGSDICSLPVLAKICQKIKLAMEQSVPFKDVDSDKYSVFPTLRGYHWRGRDCNDSD
ESVYPGRRPNNWDVHQDSNCNGIWGVDPKDGVPYEKKFCEGSQPRGIILLGDSAGAHFHISPEWITASQM
SLNSFINLPTALTNELDWPQLSGATGFLDSTVGIKEKSIYLRLWKRNHCNHRDYQNISRNGASSRNLKKF
IESLSRNKVLDYPAIVIYAMIGNDVCSGKSDPVPAMTTPEKLYSNVMQTLKHLNSHLPNGSHVILYGLPD
GTFLWDNLHNRYHPLGQLNKDMTYAQLYSFLNCLQVSPCHGWMSSNKTLRTLTSERAEQLSNTLKKIAAS
EKFTNFNLFYMDFAFHEIIQEWQKRGGQPWQLIEPVDGFHPNEVALLLLADHFWKKVQLQWPQILGKENP
FNPQIKQVFGDQGGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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