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Report for CCDS7293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7293.1 Public Homo sapiens 10 TACR2 24 110 108 CCDS HistoryNCBI Gene:6865Re-query CCDS DB by CCDS ID:7293.1Re-query CCDS DB by GeneID:6865See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7293.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373306.5 ENSP00000362403.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373306.5Link to Ensembl Protein Viewer:ENSP00000362403.4Re-query CCDS DB by Nucleotide ID:ENST00000373306Re-query CCDS DB by Protein ID:ENSP00000362403
Original member Current member NCBI NM_001057.3 NP_001048.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001057.3Link to Protein Sequence:NP_001048.2Re-query CCDS DB by Nucleotide ID:NM_001057Re-query CCDS DB by Protein ID:NP_001048Link to BLAST:NP_001048.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001048.2 398 P21452 398 100% 0 0

Chromosomal Locations for CCDS 7293.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 69404826 69405084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 69407084 69407280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 69408922 69409075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 69414945 69415139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 69415932 69416323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGGGGACCTGTGACATTGTGACTGAAGCCAATATCTCATCTGGCCCTGAGAGCAACACCACGGGCATCA
CAGCCTTCTCCATGCCCAGCTGGCAACTGGCACTGTGGGCCACAGCCTACCTGGCCCTGGTGCTGGTGGC
CGTGACGGGTAATGCCATCGTCATCTGGATCATCCTGGCCCATCGGAGGATGCGCACAGTCACCAACTAC
TTCATCGTCAATCTGGCGCTGGCTGACCTCTGCATGGCTGCCTTCAATGCCGCCTTCAACTTTGTCTATG
CCAGCCACAACATCTGGTACTTTGGCCGTGCCTTCTGCTACTTCCAGAACCTCTTCCCCATCACAGCCAT
GTTTGTCAGCATCTACTCCATGACCGCCATTGCTGCCGACAGGTACATGGCCATCGTCCACCCCTTCCAG
CCTCGGCTTTCAGCTCCCAGCACCAAGGCGGTTATTGCTGGCATCTGGCTGGTGGCTCTCGCCCTGGCCT
CCCCTCAGTGCTTCTACTCCACCGTCACCATGGACCAGGGTGCCACCAAGTGCGTGGTGGCCTGGCCCGA
AGACAGCGGGGGCAAGACGCTCCTCCTGTACCACCTCGTGGTGATCGCCCTCATCTACTTCCTGCCGCTC
GCGGTGATGTTTGTAGCCTACAGCGTCATCGGCCTCACGCTCTGGAGGCGCGCAGTGCCCGGACATCAGG
CGCACGGTGCCAACCTGCGCCACCTGCAGGCCATGAAGAAGTTTGTGAAGACCATGGTGCTGGTGGTGCT
GACGTTTGCCATCTGCTGGCTGCCCTACCACCTCTACTTCATCCTGGGCAGCTTCCAGGAGGACATCTAC
TGCCACAAGTTCATCCAGCAAGTCTACCTGGCACTCTTCTGGTTGGCCATGAGCTCTACCATGTACAATC
CCATCATCTACTGCTGTCTCAACCACAGGTTTCGCTCTGGATTCCGGCTTGCCTTCCGCTGCTGCCCATG
GGTCACACCCACCAAGGAAGATAAGCTCGAGCTGACTCCCACGACCTCCCTCTCCACGAGAGTCAACAGG
TGTCACACTAAGGAGACTTTGTTCATGGCTGGGGACACAGCCCCCTCCGAGGCTACCAGTGGGGAGGCGG
GGCGTCCCCAGGATGGATCAGGGCTATGGTTTGGGTATGGTTTGCTTGCCCCCACCAAAACTCATGTTGA
AATTTGA

Translation (398 aa):
MGTCDIVTEANISSGPESNTTGITAFSMPSWQLALWATAYLALVLVAVTGNAIVIWIILAHRRMRTVTNY
FIVNLALADLCMAAFNAAFNFVYASHNIWYFGRAFCYFQNLFPITAMFVSIYSMTAIAADRYMAIVHPFQ
PRLSAPSTKAVIAGIWLVALALASPQCFYSTVTMDQGATKCVVAWPEDSGGKTLLLYHLVVIALIYFLPL
AVMFVAYSVIGLTLWRRAVPGHQAHGANLRHLQAMKKFVKTMVLVVLTFAICWLPYHLYFILGSFQEDIY
CHKFIQQVYLALFWLAMSSTMYNPIIYCCLNHRFRSGFRLAFRCCPWVTPTKEDKLELTPTTSLSTRVNR
CHTKETLFMAGDTAPSEATSGEAGRPQDGSGLWFGYGLLAPTKTHVEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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