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Report for CCDS34041.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34041.1 Public Homo sapiens 4 SLC9B1 24 110 108 CCDS HistoryNCBI Gene:150159Re-query CCDS DB by CCDS ID:34041.1Re-query CCDS DB by GeneID:150159See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34041.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296422.12 ENSP00000296422.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296422.12Link to Ensembl Protein Viewer:ENSP00000296422.7Re-query CCDS DB by Nucleotide ID:ENST00000296422Re-query CCDS DB by Protein ID:ENSP00000296422
Original member Current member NCBI NM_139173.4 NP_631912.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_139173.4Link to Protein Sequence:NP_631912.3Re-query CCDS DB by Nucleotide ID:NM_139173Re-query CCDS DB by Protein ID:NP_631912Link to BLAST:NP_631912.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_631912.3 515 Q4ZJI4-1 515 100% 0 0

Chromosomal Locations for CCDS 34041.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 102901117 102901332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102905514 102905650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102906536 102906644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102910439 102910588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102911431 102911537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102932124 102932299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102945193 102945320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102946647 102946789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102949257 102949427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102989800 102989941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102991643 102991711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGCATACCACAGAATCAAAAAATGAACATTTGGAGGATGAAAACTTCCAAACATCTACAACTCCTCAGA
GTCTCATTGATCCTAATAATACTGCACAGGAAGAAACTAAAACTGTCTTATCAGATACAGAAGAAATAAA
ACCACAGACAAAAAAGGAGACATACATTTCTTGTCCTCTAAGAGGAGTATTGAATGTAATTATTACAAAT
GGAGTTATACTGTTTGTGATATGGTGTATGACCTGGTCAATCTTAGGCTCTGAAGCTCTCCCTGGTGGAA
ATTTATTTGGGTTGTTCATTATTTTTTATAGTGCCATTATTGGGGGAAAAATTTTACAACTCATTAGAAT
ACCTTTAGTGCCTCCACTTCCACCTCTTCTTGGGATGTTACTGGCTGGTTTTACGATTAGGAATGTTCCA
TTCATCAATGAACATGTCCATGTTCCTAACACATGGTCTTCAATTTTAAGAAGCATTGCCCTTACCATTA
TTCTAATAAGAGCTGGGCTTGGACTCGATCCACAGGCTTTGAGGCATTTGAAGGTCGTTTGTTTCAGATT
GGCTGTAGGTCCATGCCTTATGGAGGCAAGTGCAGCTGCTGTTTTTTCACACTTCATTATGAAATTTCCC
TGGCAATGGGCATTTCTATTAGGTTTTGTTCTAGGTGCTGTCTCTCCTGCTGTTGTTGTCCCTTACATGA
TGGTGCTGCAAGAAAATGGATATGGTGTTGAGGAAGGCATTCCAACCTTATTAATGGCTGCTAGCAGTAT
GGATGACATTCTGGCTATCACTGGATTCAATACATGCTTGAGCATAGTCTTTTCCTCAGGTGGTATACTT
AATAACGCCATAGCCTCTATAAGGAACGTATGTATTAGTCTGCTGGCAGGAATTGTTTTGGGATTTTTTG
TTCGATATTTTCCAAGTGAAGACCAGAAAAAACTTACATTGAAGAGAGGATTCCTTGTTTTGACTATGTG
TGTTTCTGCCGTCTTAGGCAGCCAACGTATTGGTTTACATGGATCTGGAGGATTATGCACACTAGTGTTG
AGTTTCATTGCAGGGACAAAATGGTCCCAAGAAAAGATGAAAGTCCAAAAGATTATTACGACTGTATGGG
ATATTTTTCAACCACTTCTTTTTGGTTTAGTTGGAGCAGAAGTATCTGTTTCATCGCTTGAATCAAATAT
TGTTGGCATATCTGTTGCCACTCTAAGTTTGGCATTATGTGTTCGAATTTTAACCACATATCTATTGATG
TGCTTTGCTGGTTTTAGTTTTAAGGAGAAAATATTTATTGCTTTAGCATGGATGCCCAAAGCTACAGTAC
AGGCTGTGTTAGGTCCTCTGGCTCTAGAAACAGCAAGAGTCTCCGCACCCCACTTGGAACCATATGCGAA
GGATGTGATGACAGTAGCATTTTTAGCCATCTTGATCACAGCTCCAAATGGAGCTCTACTTATGGGCATT
CTGGGGCCTAAAATGCTTACACGCCATTATGATCCAAGCAAAATAAAACTGCAGTTGTCAACATTAGAAC
ATCATTAA

Translation (515 aa):
MHTTESKNEHLEDENFQTSTTPQSLIDPNNTAQEETKTVLSDTEEIKPQTKKETYISCPLRGVLNVIITN
GVILFVIWCMTWSILGSEALPGGNLFGLFIIFYSAIIGGKILQLIRIPLVPPLPPLLGMLLAGFTIRNVP
FINEHVHVPNTWSSILRSIALTIILIRAGLGLDPQALRHLKVVCFRLAVGPCLMEASAAAVFSHFIMKFP
WQWAFLLGFVLGAVSPAVVVPYMMVLQENGYGVEEGIPTLLMAASSMDDILAITGFNTCLSIVFSSGGIL
NNAIASIRNVCISLLAGIVLGFFVRYFPSEDQKKLTLKRGFLVLTMCVSAVLGSQRIGLHGSGGLCTLVL
SFIAGTKWSQEKMKVQKIITTVWDIFQPLLFGLVGAEVSVSSLESNIVGISVATLSLALCVRILTTYLLM
CFAGFSFKEKIFIALAWMPKATVQAVLGPLALETARVSAPHLEPYAKDVMTVAFLAILITAPNGALLMGI
LGPKMLTRHYDPSKIKLQLSTLEHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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