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Report for CCDS13798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13798.1 Public Homo sapiens 22 VPREB1 24 110 108 CCDS HistoryNCBI Gene:7441Re-query CCDS DB by CCDS ID:13798.1Re-query CCDS DB by GeneID:7441See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13798.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000403807.4 ENSP00000385361.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000403807.4Link to Ensembl Protein Viewer:ENSP00000385361.3Re-query CCDS DB by Nucleotide ID:ENST00000403807Re-query CCDS DB by Protein ID:ENSP00000385361
Original member Current member NCBI NM_007128.4 NP_009059.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007128.4Link to Protein Sequence:NP_009059.1Re-query CCDS DB by Nucleotide ID:NM_007128Re-query CCDS DB by Protein ID:NP_009059Link to BLAST:NP_009059.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009059.1 145 P12018 145 100% 0 0

Chromosomal Locations for CCDS 13798.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 22244814 22244859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 22244946 22245337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (438 nt):
ATGTCCTGGGCTCCTGTCCTGCTCATGCTGTTTGTCTACTGCACAGGTTGTGGTCCTCAGCCGGTGCTGC
ATCAGCCGCCGGCCATGTCCTCGGCCCTTGGAACCACAATCCGCCTCACCTGCACCCTGAGGAACGACCA
TGACATCGGTGTGTACAGCGTCTACTGGTACCAGCAGAGGCCGGGCCACCCTCCCAGGTTCCTGCTGAGA
TATTTCTCACAATCAGACAAGAGCCAGGGCCCCCAGGTCCCCCCTCGCTTCTCTGGATCCAAAGATGTGG
CCAGGAACAGGGGGTATTTGAGCATCTCTGAGCTGCAGCCTGAGGACGAGGCTATGTATTACTGTGCTAT
GGGGGCCCGCAGCTCGGAGAAGGAGGAGAGGGAGAGGGAGTGGGAGGAAGAAATGGAACCCACTGCAGCC
AGGACACGTGTCCCTTGA

Translation (145 aa):
MSWAPVLLMLFVYCTGCGPQPVLHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLR
YFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGARSSEKEEREREWEEEMEPTAA
RTRVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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