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Report for CCDS12946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12946.1 Public Homo sapiens 19 ZFP28 24 110 108 CCDS HistoryNCBI Gene:140612Re-query CCDS DB by CCDS ID:12946.1Re-query CCDS DB by GeneID:140612See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12946.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301318.8 ENSP00000301318.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301318.8Link to Ensembl Protein Viewer:ENSP00000301318.3Re-query CCDS DB by Nucleotide ID:ENST00000301318Re-query CCDS DB by Protein ID:ENSP00000301318
Original member Current member NCBI NM_020828.2 NP_065879.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020828.2Link to Protein Sequence:NP_065879.1Re-query CCDS DB by Nucleotide ID:NM_020828Re-query CCDS DB by Protein ID:NP_065879Link to BLAST:NP_065879.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065879.1 868 Q8NHY6-1 868 100% 0 0

Chromosomal Locations for CCDS 12946.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 56539019 56539226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56539625 56539716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56547508 56547634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56547807 56547902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56548958 56549121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56550067 56550181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56550510 56550605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56553684 56555392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2607 nt):
ATGCGGGGGGCGGCGAGCGCGAGTGTCCGCGAGCCGACGCCGCTCCCGGGTAGAGGCGCCCCCCGCACAA
AGCCCCGGGCGGGCCGAGGCCCGACTGTAGGGACTCCAGCCACCTTGGCCCTCCCTGCCCGGGGAAGGCC
GCGCTCAAGGAATGGCCTCGCATCCAAAGGCCAGCGAGGAGCGGCCCCTACGGGGCCTGGGCACAGAGCT
CTGCCTTCCAGGGACACTGCTCTTCCCCAGGAGAGAAACAAGAAGCTGGAGGCTGTGGGGACAGGAATTG
AACCTAAAGCCATGTCCCAGGGCTTGGTGACATTTGGGGATGTGGCTGTAGATTTCTCCCAAGAGGAGTG
GGAGTGGCTGAACCCCATTCAGAGGAACTTGTACAGGAAGGTGATGTTGGAGAACTACAGGAACCTGGCA
TCGCTGGGACTTTGTGTTTCTAAGCCCGATGTGATCTCCTCGTTGGAACAAGGAAAAGAGCCTTGGACAG
TGAAGCGAAAGATGACAAGAGCCTGGTGCCCAGACTTGAAGGCTGTGTGGAAGATCAAGGAGTTACCTCT
CAAGAAGGACTTCTGCGAAGGAAAGCTATCCCAGGCAGTGATAACAGAGAGACTCACAAGCTATAATCTG
GAGTACTCTCTGTTAGGGGAACACTGGGATTATGATGCTCTGTTTGAGACACAGCCGGGCTTGGTGACTA
TCAAAAACCTGGCTGTTGACTTCCGCCAGCAGCTACACCCAGCTCAGAAGAATTTCTGTAAGAATGGGAT
ATGGGAGAACAACAGTGACCTGGGATCAGCAGGACATTGTGTGGCTAAGCCAGATTTAGTCTCTTTACTA
GAGCAAGAGAAGGAGCCCTGGATGGTGAAGCGAGAGCTGACAGGAAGCCTGTTCTCAGGCCAGCGATCTG
TACATGAGACCCAGGAATTATTTCCAAAGCAAGATTCATATGCTGAAGGGGTAACAGACAGAACCTCAAA
CACTAAACTTGATTGTTCCAGTTTCAGAGAAAATTGGGATTCTGACTATGTGTTTGGAAGGAAGCTTGCA
GTAGGTCAAGAGACACAATTCAGGCAAGAGCCAATTACTCATAACAAAACCCTCTCTAAGGAAAGAGAAC
GTACATATAACAAATCTGGAAGATGGTTCTATTTGGACGATTCAGAAGAGAAAGTTCATAATCGTGATTC
AATTAAAAATTTTCAAAAAAGTTCAGTGGTAATAAAACAAACAGGCATCTATGCAGGAAAAAAGCTTTTC
AAGTGTAATGAATGTAAGAAAACTTTTACCCAGAGCTCATCTCTTACTGTTCATCAGAGAATTCACACTG
GAGAGAAACCTTATAAATGTAATGAATGTGGGAAGGCCTTTAGTGACGGCTCATCCTTTGCCCGACACCA
GAGATGTCACACTGGCAAGAAGCCCTATGAGTGCATTGAGTGTGGGAAAGCTTTCATACAGAACACATCC
CTTATCCGTCACTGGAGATACTATCATACTGGGGAGAAACCCTTTGATTGCATCGATTGTGGGAAAGCCT
TCAGTGACCACATAGGGCTTAATCAACACAGGAGAATTCATACTGGAGAGAAACCTTACAAATGTGATGT
ATGTCACAAATCCTTCAGGTATGGTTCCTCCCTTACTGTACATCAAAGGATTCATACCGGAGAAAAACCA
TATGAATGTGATGTTTGCAGAAAAGCCTTCAGCCATCATGCATCACTCACTCAACATCAAAGAGTACATT
CTGGAGAAAAGCCTTTTAAGTGTAAAGAGTGCGGAAAAGCTTTTAGGCAGAATATACACCTTGCCAGTCA
TTTAAGGATTCATACTGGGGAGAAGCCTTTTGAATGTGCGGAGTGTGGAAAATCCTTCAGCATCAGTTCT
CAGCTTGCCACTCATCAGAGAATCCATACTGGAGAGAAGCCCTATGAATGTAAGGTTTGTAGTAAAGCGT
TCACCCAGAAGGCTCACCTTGCACAGCATCAGAAAACCCATACAGGAGAGAAACCATATGAGTGCAAGGA
ATGCGGTAAAGCCTTCAGCCAGACCACACACCTCATTCAACATCAGAGAGTTCACACTGGTGAGAAACCC
TATAAATGTATGGAATGTGGGAAGGCCTTTGGTGATAACTCATCCTGTACTCAACATCAAAGACTGCACA
CTGGCCAAAGACCTTATGAATGTATTGAGTGTGGAAAGGCATTCAAGACAAAATCCTCCCTTATTTGTCA
TCGCAGAAGTCATACTGGAGAAAAACCTTATGAATGCAGTGTGTGTGGCAAAGCCTTTAGTCATCGTCAA
TCCCTTAGTGTACATCAGAGAATCCATTCTGGAAAGAAACCATATGAATGTAAGGAATGTAGGAAAACCT
TCATCCAAATTGGACACCTTAATCAACATAAGAGAGTTCATACTGGAGAGAGATCTTATAACTATAAGAA
AAGCAGAAAAGTCTTCAGGCAAACTGCTCACTTAGCTCATCATCAGCGAATTCATACTGGAGAGTCGTCA
ACATGCCCCTCTTTACCTTCCACGTCAAATCCTGTGGATCTGTTTCCCAAATTTCTCTGGAATCCATCCT
CCCTCCCATCACCATAG

Translation (868 aa):
MRGAASASVREPTPLPGRGAPRTKPRAGRGPTVGTPATLALPARGRPRSRNGLASKGQRGAAPTGPGHRA
LPSRDTALPQERNKKLEAVGTGIEPKAMSQGLVTFGDVAVDFSQEEWEWLNPIQRNLYRKVMLENYRNLA
SLGLCVSKPDVISSLEQGKEPWTVKRKMTRAWCPDLKAVWKIKELPLKKDFCEGKLSQAVITERLTSYNL
EYSLLGEHWDYDALFETQPGLVTIKNLAVDFRQQLHPAQKNFCKNGIWENNSDLGSAGHCVAKPDLVSLL
EQEKEPWMVKRELTGSLFSGQRSVHETQELFPKQDSYAEGVTDRTSNTKLDCSSFRENWDSDYVFGRKLA
VGQETQFRQEPITHNKTLSKERERTYNKSGRWFYLDDSEEKVHNRDSIKNFQKSSVVIKQTGIYAGKKLF
KCNECKKTFTQSSSLTVHQRIHTGEKPYKCNECGKAFSDGSSFARHQRCHTGKKPYECIECGKAFIQNTS
LIRHWRYYHTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP
YECDVCRKAFSHHASLTQHQRVHSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPFECAECGKSFSISS
QLATHQRIHTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKP
YKCMECGKAFGDNSSCTQHQRLHTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPYECSVCGKAFSHRQ
SLSVHQRIHSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSYNYKKSRKVFRQTAHLAHHQRIHTGESS
TCPSLPSTSNPVDLFPKFLWNPSSLPSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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