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Report for CCDS9249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9249.1 Public Homo sapiens 12 SNRNP35 24 110 108 CCDS HistoryNCBI Gene:11066Re-query CCDS DB by CCDS ID:9249.1Re-query CCDS DB by GeneID:11066See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9249.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000350887.5 ENSP00000340774.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000350887.5Link to Ensembl Protein Viewer:ENSP00000340774.5Re-query CCDS DB by Nucleotide ID:ENST00000350887Re-query CCDS DB by Protein ID:ENSP00000340774
Original member Current member EBI ENST00000526639.3 ENSP00000432595.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000526639.3Link to Ensembl Protein Viewer:ENSP00000432595.2Re-query CCDS DB by Nucleotide ID:ENST00000526639Re-query CCDS DB by Protein ID:ENSP00000432595
Original member Current member NCBI NM_022717.4 NP_073208.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022717.4Link to Protein Sequence:NP_073208.1Re-query CCDS DB by Nucleotide ID:NM_022717Re-query CCDS DB by Protein ID:NP_073208Link to BLAST:NP_073208.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073208.1 246 Q16560-1 246 100% 0 0

Chromosomal Locations for CCDS 9249.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 123465541 123466281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGAACGATTGGATGCCCATCGCCAAGGAGTATGATCCACTCAAAGCGGGCAGCATTGATGGCACCGATG
AAGACCCACACGACCGCGCGGTCTGGAGGGCAATGCTGGCACGATATGTCCCCAACAAAGGTGTCATAGG
AGATCCCCTCCTCACCCTGTTTGTGGCCAGACTAAACTTGCAGACCAAGGAGGACAAATTAAAGGAAGTC
TTTTCCCGCTATGGTGACATCCGGCGGCTTCGGCTGGTCAGGGACTTGGTCACAGGTTTTTCAAAGGGCT
ACGCCTTCATCGAATACAAGGAGGAGCGTGCCGTGATCAAAGCTTACCGAGATGCTGATGGCCTGGTTAT
TGACCAGCATGAGATATTTGTGGACTACGAGCTGGAAAGGACTCTCAAAGGGTGGATCCCTCGGCGACTT
GGAGGCGGTCTTGGGGGAAAAAAGGAGTCTGGGCAACTGAGATTTGGGGGACGGGACCGGCCTTTTCGAA
AACCTATTAACTTGCCAGTTGTTAAAAACGACCTCTATAGAGAGGGAAAACGGGAAAGGCGGGAGCGATC
TCGATCCCGAGAAAGACACTGGGACTCGAGGACAAGGGATCGAGACCATGACAGGGGCCGGGAGAAGAGA
TGGCAAGAAAGAGAGCCGACCAGGGTGTGGCCCGACAATGACTGGGAGAGAGAGAGGGACTTCAGAGATG
ACAGGATCAAGGGGAGGGAGAAGAAGGAAAGAGGCAAGTAG

Translation (246 aa):
MNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFVARLNLQTKEDKLKEV
FSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQHEIFVDYELERTLKGWIPRRL
GGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKR
WQEREPTRVWPDNDWERERDFRDDRIKGREKKERGK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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