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Report for CCDS45994.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45994.1 Public Homo sapiens 19 RTBDN 24 110 108 CCDS HistoryNCBI Gene:83546Re-query CCDS DB by CCDS ID:45994.1Re-query CCDS DB by GeneID:83546See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 45994.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393233.6 ENSP00000376925.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393233.6Link to Ensembl Protein Viewer:ENSP00000376925.3Re-query CCDS DB by Nucleotide ID:ENST00000393233Re-query CCDS DB by Protein ID:ENSP00000376925
Original member Current member EBI ENST00000458671.6 ENSP00000416375.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000458671.6Link to Ensembl Protein Viewer:ENSP00000416375.1Re-query CCDS DB by Nucleotide ID:ENST00000458671Re-query CCDS DB by Protein ID:ENSP00000416375
Original member Current member EBI ENST00000674343.2 ENSP00000501410.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000674343.2Link to Ensembl Protein Viewer:ENSP00000501410.1Re-query CCDS DB by Nucleotide ID:ENST00000674343Re-query CCDS DB by Protein ID:ENSP00000501410
Original member Current member NCBI NM_001080997.3 NP_001074466.1 Accepted alive Link to Nucleotide Sequence:NM_001080997.3Link to Protein Sequence:NP_001074466.1Re-query CCDS DB by Nucleotide ID:NM_001080997Re-query CCDS DB by Protein ID:NP_001074466Link to BLAST:NP_001074466.1
Original member Current member NCBI NM_001270441.2 NP_001257370.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001270441.2Link to Protein Sequence:NP_001257370.2Re-query CCDS DB by Nucleotide ID:NM_001270441Re-query CCDS DB by Protein ID:NP_001257370Link to BLAST:NP_001257370.2
Original member Current member NCBI NM_001270443.2 NP_001257372.1 Accepted alive Link to Nucleotide Sequence:NM_001270443.2Link to Protein Sequence:NP_001257372.1Re-query CCDS DB by Nucleotide ID:NM_001270443Re-query CCDS DB by Protein ID:NP_001257372Link to BLAST:NP_001257372.1
Original member Current member NCBI NM_001270444.2 NP_001257373.1 Accepted alive Link to Nucleotide Sequence:NM_001270444.2Link to Protein Sequence:NP_001257373.1Re-query CCDS DB by Nucleotide ID:NM_001270444Re-query CCDS DB by Protein ID:NP_001257373Link to BLAST:NP_001257373.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074466.1 229 Q9BSG5-1 229 100% 0 0
NP_001257370.2 229 Q9BSG5-1 229 100% 0 0
NP_001257372.1 229 Q9BSG5-1 229 100% 0 0
NP_001257373.1 229 Q9BSG5-1 229 100% 0 0

Chromosomal Locations for CCDS 45994.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12825706 12825933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12826775 12826871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12828657 12828767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12828869 12828953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12829811 12829979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGGACTGCAGGGTCCACATGCGACCCATCGGCCTGACGTGGGTGCTGCAACTGACCTTGGCATGGATCC
TGCTAGAAGCCTGTGGAGGGAGCCGCCCACTCCAAGCCAGGTCCCAGCAACACCATGGGCTGGCAGCTGA
TCTGGGCAAAGGCAAGCTGCACCTGGCAGGACCTTGTTGTCCCTCAGAGATGGACACAACAGAGACATCG
GGCCCTGGAAACCATCCAGAACGCTGTGGAGTGCCGAGCCCTGAATGCGAATCCTTCCTGGAACACCTCC
AACGTGCCCTTCGCAGTCGCTTCCGCCTGCGGCTATTGGGGGTACGCCAGGCACAGCCGCTCTGCGAGGA
GCTCTGCCAGGCCTGGTTCGCCAACTGCGAAGATGATATCACCTGCGGCCCGACTTGGCTCCCACTCTCA
GAAAAAAGGGGCTGTGAGCCCAGCTGCCTTACCTATGGACAGACCTTCGCAGACGGGACGGACCTTTGTC
GCTCGGCTCTGGGCCACGCCCTACCGGTGGCTGCTCCTGGAGCCCGTCACTGCTTCAACATCTCCATCTC
CGCGGTACCTCGTCCCAGACCAGGACGACGGGGCCGGGAAGCTCCCTCCCGGCGTTCCCGCAGCCCTCGC
ACCTCCATCCTGGACGCTGCGGGCAGCGGGAGTGGCAGTGGAAGCGGCAGCGGCCCCTAG

Translation (229 aa):
MDCRVHMRPIGLTWVLQLTLAWILLEACGGSRPLQARSQQHHGLAADLGKGKLHLAGPCCPSEMDTTETS
GPGNHPERCGVPSPECESFLEHLQRALRSRFRLRLLGVRQAQPLCEELCQAWFANCEDDITCGPTWLPLS
EKRGCEPSCLTYGQTFADGTDLCRSALGHALPVAAPGARHCFNISISAVPRPRPGRRGREAPSRRSRSPR
TSILDAAGSGSGSGSGSGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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